Pobe012004.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- rfx7.L
- Assembly
- GCA_949628195.1
- Location
- OX451215.1:155959532-155971718[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-11 3.3e-07 32.4 0.4 50 78 1 29 1 30 0.94 2 2 3.7e-20 7e-16 60.2 0.1 32 78 56 102 53 103 0.95
Sequence Information
- Coding Sequence
- ATGAAGCAAGTATTCCCCGGAATACGACCAAGACGTTTAGGTACAAGAGGTCACTCACGCTATTGTTATGCTGCTATGAGAAAAACAAGTAAATTACCAGCTCCTCATTTACCCACACTAACTACATTAAAGCCCTCAAAAGGGCTTAttttaatttgcgcAGTTTATTGTGATCGTTTGGATATAAAACCTTTATCTACCGCTGATTTTGGTAAAGTTATGAAGCAAGTATTCCCCGGAATACGACCAAGACGTTTAGGTACAAGAGGTCACTCACGCTATTGTTATGCTGCTATGAGAAAAACAAGTAAATTACCAGCTCCTCATTTACCCACACTAACTACATTAAAGCCCTCAAAAGGAGTTGGAGAAAAAGACGGTAGCATAGATTTATCTACAAATATTATTGATAGCACAGAAGAACAAGAAGAATCATGGGGTGTTGTAAAACAATGGGCAGAGACTATGTTACATGTTAAAATAGATAATATCACAGATTTGGCAACACATATAAAATCAAGTAAATCAATGCCATTAGCGGGTGGTACGCAGTTACCGTATACTGGAGGCGGGAAAGGCGCAAGTAGCGGTATGACCAATAAAAAACATACGCAAAGAGAACCCAAAGAGAAGCGGGTAATGGCGgATATCGGGCCTTTAAAGAAACGGCGTAAGAAGAAACGAAAGGGATCTTCTTCATCGGAATCTAGTTGCCATCAAAATGTTAATCCCGGCGATTCACAACAAACGCAACCACAATTATCACCAGCTAACAGCTCGAAAAGTGGTGGCCATCATAGCGCGCTATCGCCAGCTATGGACGATGGCCAGaaagtaaaaatcaaacaaGAAATTATAGACTCTCCCGGATATCCACCTTCAGTAGGCAGTTTATCTACCCACTGTCAGTCCACTGACTCGGCTAACGTTACTCAGTACCAAACATCAACAATAGTGTCAGCAGgagtaaatactttaaaaatgccGCAACAGCAAGTAATGCCCATGAATTTGGCTGCCGAAACAAGAGGTGGAATATCAAACGTTTTAACTAGAGCTCCAGCGACTTCAGCATCACTAACAGCAAGTGCTTTTGAACACGTGCGACCATCAAGCGCAACAACACCCACAACAATAGTAGCAGCAGCTGTGAAGAATTTAACTCCTAAAATAATGGAATTATCTACCGAAAACCAAACGATTACTTTGCCGCCATCACAAACTATTATCAAGCAAGAGATTGGAGCCGAAGATTATAACacttcgaatattttttgcaagaaaGTTAGAAAAGCACAACAAACCAAAGGATTTTGGGTAAATTCTCCAACATCAAATCGAAACGTTTCATCTGCGGCTCCAACAACTACTTTTCCTATTATAACAACAACAGCTTCGACGCCGCCACCCAACGCGGCAAGTGTTATATCAGCACCATCAAATAACACAGAATCCGTTGTGGTTTACAATATGGGTCCACCTACACAAATGGCTCCTTCCACTAGTCCCAATAGCCAATCAAATGATGATGTTAACTCGTTAGGACAACCAAAGGTACTTTCACGTAATTTGCTACAGTTAAAAGCTAAGAAAATAATGGCTGCTGCAGCAGCAGCTGGTTGCGAACCTCCAGATTTAAATGCGGCCAAAGATGCGGCGGATTTGCCGGAAAACTTAGGGCTACCTCGAGAGCGAGTTATTAGCATTTGTAATATGGATAAGCATGAGTTAGATGATTACTTTTTACCTGTAGAAGAAGAAAATTCGGAGGATCAAGAAACTGAGTTGCTTCAATATTTTCAGATGGGAGACGCTGAggaaaaattaaccaaaaattctTCCTCTGATGCAAAAAGGAACAGTAATTCAACAGTAAATCAATTGACGTCAGCCACAACATCAATATCAAAATTGGCATCAAATATAACAACGTCGAATTCAACGTCGACAATGACAACATCAAAAATGTCGACCGGTGTGATGATAAGCACATACAAAAGTATCAATCATACGCCGTCTCTAAacgatataacaacaaatagtcaATTACAAAATGGTAAAACAAAACAACCTTTTACATTGGATTATCAAAATCCAACAACACACtctttaaaattcaattcaacTTCAACATGTTTAACAGCCACAACATCATCGTCATGTTTAAATACTGTTGGTACTGCCTCAGCGTCTCTAGTACAATTAACTCAAAAGCATCAACAACAAATGCAAcagccacaacaacaacaacaacaacagccacaacaacaacaacagctacaACTACAGCAAGAGCTTCAGCAACAAAAATCTCAACCCCAAATACATTCAAAGGTTTCTATTAAacgtaaaattaatttaaataccaGATCTACTACTTCGGAAATAACAGCGGCAAGAAAAAATTACAGTTTTCTACCGATATCACCAAATATCAATTCGACATCATCAACTAACAACACATTGTTGTCTATGACCAACAACAATAGAAATACCTCGGGTAATGGATTTTTTGCCAGCCCTGGCTTATCGCGACTATTGACGAAACAGCAGTCCTTAGATTGTGACACTTCTTCAGATCCAATGATTGGAGCAACGCGACGTCTTCGTTCTTATAACTCGATGATGACATCTGCTTCAGCGCCTCCAAGCCCTTCGGTGTTAAAGCAGCAACAGGAGCAACAATTGTTTGGCCACCTGTCGCACAACATTTTAATGGATCAGTGGTCTAATTTAGCCGGGCCTTTTAATAATCCGACGACAAATGTTTCCAACTCGTTAATGGGTGATCAAAACTCTTTAGATTTAGATTTATTTGGAGAAGCAGCTGCAGCAGCAGCTTCGACAGCCACCAACACAACATTTAGCAATAGAAACAATTTCAACATGGGTTTAAACAATATTGTTGAAGGAATAACGAGTAATAATGCTGAAAGTTCGGTCGGACAAATTAGTGATTTCACACAACGTTCGCAATCCGTTCCACTTTCACAATTGCAACGTTCTCATTCGCCCACATTTAACCGCAGCTACCATTGCGGCGTTAACAATCTTTCTGCCATTTCGGCATGTAATTCATTAACCGAAACACCAGTACCATCTGAATTTATTGATTCTGTTACAATGCTGTCGGAAAATAGCTGCAGCCAACAAAGTTCCACAATAAAACTAGAAGAAGTGGCAAATGTTGTAGCTTCTGATTCAACAGCCATATTGGATGAAGTAGACGTGAGTGAAATATTGTCATCCCCAGATTTTGTAGCAAAATTTTCCAATATCCACCAGACGGGAAAAACAAAGACGACTTGTTCCTCGGCAGGCTCTTCGTCTGGTTATAGTAGTGCTGGCCATTTTTCACTATCATCTGGTAGCTACAGCATTGGAAGAGTTGGCAATGGGGGAGGCGGTGGTGCTTTGTCTTCATCGATATCACGTTCCGTACCTTCAACTCCCTTGCCACATCAAAACCCACAAAGTCTATTTGGAAatggtaatactttttatagaaGACGTTTTATAAACAACTGTCAATCCCTAAATGGTGGCATTGTAGATGGTAGCGTACTTGATAATCTTAATTCGTTTTCTAACAATTTCTCGTCGACTGGCAAATACCTTTATGGCAATATCTCGTCTTCTTTATCCCGTTCAGCGTGCGATATCTCCAAGTCAATGCCTTCTACACCCATAACAACTACACCAAGTAGTTTTCGTTACAGTCCTTCAGAATTTACACGCGATTTCCTTATTAACGGTAATACTATAGACGATAGTATAACATCTTCATTTGGGGCGATGGGCAATGATAATCTCATCGGCTCTGATGTGGTGGGCATGGATGCTTCTCTAAATTCTGAATCCCTACTTAATGAGGAAGATACTTTGATAAACGGTTCAGCGGCCATGAGTCAAGTAGATAGTGGAGTATTAACACCTGATTTCACTGTGCAATCCGAAACATCTGTCGCTTGTTTGGGCGGAGCTGTAGGTGAGTCTGTTGTTATTGGCGTGGGTTCGGACTTATTagataatttgtag
- Protein Sequence
- MKQVFPGIRPRRLGTRGHSRYCYAAMRKTSKLPAPHLPTLTTLKPSKGLILICAVYCDRLDIKPLSTADFGKVMKQVFPGIRPRRLGTRGHSRYCYAAMRKTSKLPAPHLPTLTTLKPSKGVGEKDGSIDLSTNIIDSTEEQEESWGVVKQWAETMLHVKIDNITDLATHIKSSKSMPLAGGTQLPYTGGGKGASSGMTNKKHTQREPKEKRVMADIGPLKKRRKKKRKGSSSSESSCHQNVNPGDSQQTQPQLSPANSSKSGGHHSALSPAMDDGQKVKIKQEIIDSPGYPPSVGSLSTHCQSTDSANVTQYQTSTIVSAGVNTLKMPQQQVMPMNLAAETRGGISNVLTRAPATSASLTASAFEHVRPSSATTPTTIVAAAVKNLTPKIMELSTENQTITLPPSQTIIKQEIGAEDYNTSNIFCKKVRKAQQTKGFWVNSPTSNRNVSSAAPTTTFPIITTTASTPPPNAASVISAPSNNTESVVVYNMGPPTQMAPSTSPNSQSNDDVNSLGQPKVLSRNLLQLKAKKIMAAAAAAGCEPPDLNAAKDAADLPENLGLPRERVISICNMDKHELDDYFLPVEEENSEDQETELLQYFQMGDAEEKLTKNSSSDAKRNSNSTVNQLTSATTSISKLASNITTSNSTSTMTTSKMSTGVMISTYKSINHTPSLNDITTNSQLQNGKTKQPFTLDYQNPTTHSLKFNSTSTCLTATTSSSCLNTVGTASASLVQLTQKHQQQMQQPQQQQQQQPQQQQQLQLQQELQQQKSQPQIHSKVSIKRKINLNTRSTTSEITAARKNYSFLPISPNINSTSSTNNTLLSMTNNNRNTSGNGFFASPGLSRLLTKQQSLDCDTSSDPMIGATRRLRSYNSMMTSASAPPSPSVLKQQQEQQLFGHLSHNILMDQWSNLAGPFNNPTTNVSNSLMGDQNSLDLDLFGEAAAAAASTATNTTFSNRNNFNMGLNNIVEGITSNNAESSVGQISDFTQRSQSVPLSQLQRSHSPTFNRSYHCGVNNLSAISACNSLTETPVPSEFIDSVTMLSENSCSQQSSTIKLEEVANVVASDSTAILDEVDVSEILSSPDFVAKFSNIHQTGKTKTTCSSAGSSSGYSSAGHFSLSSGSYSIGRVGNGGGGGALSSSISRSVPSTPLPHQNPQSLFGNGNTFYRRRFINNCQSLNGGIVDGSVLDNLNSFSNNFSSTGKYLYGNISSSLSRSACDISKSMPSTPITTTPSSFRYSPSEFTRDFLINGNTIDDSITSSFGAMGNDNLIGSDVVGMDASLNSESLLNEEDTLINGSAAMSQVDSGVLTPDFTVQSETSVACLGGAVGESVVIGVGSDLLDNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -