Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.4e-06 0.018 16.4 0.0 21 39 13 32 11 36 0.84

2 4 4e-13 2.1e-09 38.5 0.2 2 39 48 85 47 88 0.93

3 4 7.9e-16 4.1e-12 47.2 0.1 2 45 103 147 102 147 0.96

4 4 2e-19 1e-15 58.7 0.0 1 43 154 197 154 198 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.4e-06	0.018	16.4	0.0	21	39	13	32	11	36	0.84
2	4	4e-13	2.1e-09	38.5	0.2	2	39	48	85	47	88	0.93
3	4	7.9e-16	4.1e-12	47.2	0.1	2	45	103	147	102	147	0.96
4	4	2e-19	1e-15	58.7	0.0	1	43	154	197	154	198	0.96

Coding Sequence: GTTCGGGTGTGTTCACACGTGCGCGGTGTCGCTGAGCAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGGCACGCCGAAGAAGGACGGCGCCGCACGGAGCTGGAGCGACGGCGACCTGCGCGCCGCGCTGCACGCGCTGCGCGCCGGCGCGCTCTCCGCCAACAAAGCGAGCAAGGCGTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGCCGCGGCGACCTGCAGCGGGCGCTCGCCGCCATACGCTGCGGCGCTGCGTCCGTCCAGCGGGCCGCCGCGCAGTACGGCATCCCGACCGGCACGTTGTATGGGAGGTGCAAGCGGGAGGGCATCGAGCTATCCCGCTCTAACCCGACGCCGTGGTCGGAGGACGCGATGGGCGAGGCGCTCGAGGCGGTCAGGGTCGGCCAGATGTCCATCAACCAGGCGGCGATCCATTACAACCTGCCCTACTCCTCGCTGTACGGCAGGTTCAAGCGGTGCAAGTACCAGCTGCAGGGTCTTCAAGCGAACCAACCGACGGAGGTTCGGAGCGCGGTGGACGCCGAGCGGCAGGCTCCCCAACAGGATCAGGAGTCACTGGAGTACCACAGGCCGTTGCCGCAGGCCGCCGAGGGGTACGCGGGCGCGCACCTCCCGTACAGCCAGCTGCTCGCGATGGGCGACGCGCACGAGCACGCGTTGTACGAGCAGTGCGGGCCGTTGTACTACGCGCAGGGCTGCCACAGCGGCGTGGCCACCAGTTGA
Protein Sequence: VRVCSHVRGVAEQASATYGIPSTTLWQRAHRLGIGTPKKDGAARSWSDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGLQANQPTEVRSAVDAERQAPQQDQESLEYHRPLPQAAEGYAGAHLPYSQLLAMGDAHEHALYEQCGPLYYAQGCHSGVATS

Sequence clustering based on sequence similarity using MMseqs2