Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.2e-06 0.0099 16.3 0.0 21 39 3 22 1 26 0.84

2 4 4.6e-13 1.1e-09 38.6 0.2 2 39 38 75 37 78 0.93

3 4 8.8e-16 2.1e-12 47.3 0.1 2 45 93 137 92 137 0.96

4 4 6.1e-19 1.4e-15 57.4 0.0 1 43 144 187 144 188 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.2e-06	0.0099	16.3	0.0	21	39	3	22	1	26	0.84
2	4	4.6e-13	1.1e-09	38.6	0.2	2	39	38	75	37	78	0.93
3	4	8.8e-16	2.1e-12	47.3	0.1	2	45	93	137	92	137	0.96
4	4	6.1e-19	1.4e-15	57.4	0.0	1	43	144	187	144	188	0.96

Coding Sequence: ATGCTGCAGGCATCAGCTACATACGGGATACCGTCGACGACGTTGTGGCAACGTGCCCACCGGCTGGGCATTGATACTCCAAAGAAGGACGGCGCCGCCAAGAGCTGGAGCGACGGCGACCTGCGCGCCGCGCTGCACGCGCTGAGGGCCGGCGCGCTCTCCGCGAACAAGGCGAGCAAGGCGTACGGTATACCGAGTAGTACGTTATACAAGATCGCACGTCGTGAGGGAATCCGATTGGCGGCGCCGTTCAACGCAGCTCCGACCGCCTGGCGCCGGGGTGACCTCCAGCGCGCGCTGGCTGCCATCCGCTGTGGCGCTGCTTCCGTCCAGCGTGCTGCAGCGCAGTACGGCATACCCACCGGAACTCTGTATGGAAGGTGTAAACGGGAGGGAATCGAGCTGTCCAGGTCCAATCCCACGCCGTGGTCAGAGGACGCGATGGGCGAGGCGCTCGAGGCAGTTAGGGTCGGTCAGATGTCTATCAACCAGGCGGCGATTCACTTCAACTTGCCCTACTCCTCGCTGTACGGCAGGTTCAAGCGGTGCAAGTACCAGCTGCAGGGTTTTCAAACGAATCAACCAATCGAAGCGCAGAACACACTCGAAACGGAACAACAGTCGCAACAGCAAAACACGGAGTCTTTGGAGTACTACAATGCGATGCCTCTCTGTAATGATGAGTACGCGAGCGTACACCTTCCATACAGCCAGCTGCTGGCGATGGGCGACGCTCACGAGCACGCGCTGTATGAACAGTGTGGCTCCGGATTGTACTATGCGCAGGGATGTCACAGCGGAGTGGCCACCAGTTGA
Protein Sequence: MLQASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWSDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQLQGFQTNQPIEAQNTLETEQQSQQQNTESLEYYNAMPLCNDEYASVHLPYSQLLAMGDAHEHALYEQCGSGLYYAQGCHSGVATS

Sequence clustering based on sequence similarity using MMseqs2