Ptie040920.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- Aef1
- Assembly
- GCA_963931995.1
- Location
- OZ008369.1:6157575-6161344[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0014 32 7.0 0.2 15 48 181 214 173 218 0.82 2 4 3.3e-05 0.75 12.2 0.0 21 52 215 246 212 247 0.89 3 4 0.0083 1.9e+02 4.5 0.1 21 51 243 273 241 274 0.87 4 4 0.00019 4.3 9.8 0.1 21 47 271 297 269 304 0.88
Sequence Information
- Coding Sequence
- ATGCATATAAAAAGTCTGCAACATGCCCATGCTGCTGCAGCAGCGGCAGCAGCAATGCCGAATTGTGAAATAGTAATAGTATCATCGTCGCCtaatcacaataataataataataacaacaacaataataacaacaacaacaatgaaagTACAAATGGACCAACCAGTAATGGTGGTGGCAACGGCCAAAATGGCCCTAATGGTCATCATCAACATGGCCCATCGGCTGCAGCACCGACGGAAATTCCAATACCATTTATGCATTTGGCTGGCGTGAGTGCTGAGGCTCATGCTGCGGCCCAGGCAGCCGCAATGGCTGCGGCACAAGCCGCTGCCGCGCAAGCAGCTGCAGCCGAACATCACGCGAATGGTGGACCCACACCTGGAAGTGCTTTGGCTCATCATCATGCCATATTGCAGCAGCATCCCTTGGCCCATTTGGTGGCCACTGCTGCTCATAGTCCTGCTCTATCCGAACAACATTTTATAGCCCGCGATGCTACTGTTTTGACTAATGGCCACAACGGCAGTTCACCGCCTCCCTCGGGAGGATCAGCTCCCGAGAAACCATTTCAATGTAATGTCTGCGAAAGACGATTCCGGCAACTGAGCACACTCACCAATCATGTGAAAATTCACACTGGAGAAAAACCGTACAAATGCAATGTTTGTGATAAAACGTTTCGTCAATCGTCCACTCTTACAAATCACTTGAAAATCCACACCGGAGAGAAACCGTTCAATTGTACCTATTGTCCGAAACATTTTCGTCAATTGAGTACATTaacaaatcatttaaaaattCATACAGGCGAGAAACCTTTTGAATGTGCCGTTTGTAAAAAGCAATTCCGTCAATCAAGTACACTTAACAACCACATAAAAATCCATGTAATGGACAAAGTCTACGTTCCCGTTAAGATTAAAACTGAGGAGGAGGAAGGATGA
- Protein Sequence
- MHIKSLQHAHAAAAAAAAMPNCEIVIVSSSPNHNNNNNNNNNNNNNNNESTNGPTSNGGGNGQNGPNGHHQHGPSAAAPTEIPIPFMHLAGVSAEAHAAAQAAAMAAAQAAAAQAAAAEHHANGGPTPGSALAHHHAILQQHPLAHLVATAAHSPALSEQHFIARDATVLTNGHNGSSPPPSGGSAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_01019693;
- 80% Identity
- iTF_01175667;