Ptie018225.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963931995.1
- Location
- OZ008367.1:354819136-354830140[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 2.8e+04 -2.9 0.0 38 62 85 110 62 116 0.73 2 2 2.8e-23 4.2e-19 70.2 0.1 4 76 419 489 416 490 0.93
Sequence Information
- Coding Sequence
- ATGGGACGCCGGTGTTGTATTGAAAGCTGTTTGTCAACATCACGTTTGCCGGAACATCATGGTGTCACATATCATTCCTTTCCCGTCGATGAGAATACCCGGGCCATATGGATTAGGAATACTAGAATAGATGCACGCCGCAATATAACCAAAAGTGTTTTGGTGTGTTCCCGTCATTTTCGTCGGGCAGACTTTCAGCCGCAGCGTAGTGGAAAGTATTTGTTGAAACAAAAGGTCTTCCCTACTGTCTTTCCATGGGGCAAAGTTGAAGCCAATCAAATTGAGGAGGATTTAGAGTTTCTAAGTAGTACCTCCTCAGCAACTGCGGCAGCGCCCACAAATCTGTTGTCAGCCACCGCTTCTTCGGTGGATGAAGACACCAAAGCAACGGTGGCTGCAACAGTGGCTCAAATAATGGCACAAACGGCCGAGTTAAATGCTCAGGCTGCCTTGAAAGCGGAGAAATCATTTGAGGCCGGCGACGATGCGGCAGCACCCGATGCCGGTCATGGTTCTCCCACGGGTGTTAAATTTGAGCCGGTGACTACATTCAATCCCGGCGCTCGTCTAGAGGCTCAAGATTTTGATAGAATTTGGCATTCTGCCCGTATTGTTGAGGTGGACAATGATGATCGTGAGGTTTTGATAAAATTCGAAAAGACCGGAAAAGTCAAACTGCCCATTGTGGGTACAGAGGAATGGATACCCATGAATTCTTCACGTCTAAGGCAGAAAATATCCACAAAACCTATACTCAACTTTAATGTGGAAGACAAATGTTTGGCCCGTTGGTCAGGACCTAGAAAATTCCCTGGTACCGTAAAGAAAGTACTGCCCAATGATACCTATGAGATTCTATTCGATGATGGTTATATAAAGAATGTTCGAGCCATACATATGAATAAAGTTATGCCCGCAGACGCTGAAGTTGTAGTGGAGAATCCAGCAGTGGAAGGAAGTAACGCGGAGGTTTCACCAAATGCCTCTTCAACGCCTATTGCAGGAACACCTTTATTGTCGCCAGGCATCAAGAGGCCAGCATCATCAGGAACACCTTCAAGTTCGGGCAAAAAGAAACGTGCACCAAGTTCGGCGCGAAAGGACTGGCCTTTGTTGGATCTGTCGAAATTGGATTTGGCCTCTCTCAATCTACCCGAGGTGCCAAAAGATGGTGAATGGGCCTGCCACTGGGTTAACGATCAGCCGATCGGTCGTGAGGGCTTTCTTTTGGTCGGTGAACATCGCAAACCCACGGTGGTTGTTGAAGATTGGCGTTTACCACCCGGTTGGATTAAACACATGTATCAGCGTTCCAATGTTTTGGGCAAATGGGATGTGATTTTGGTTACACCCACCGGCAAACGTTTCCGTTCCAAGGCGGATCTTAAAACGTTCCTCGAGGAACAGGGACAAGTATATAACCCGGATATCTATGACTTTAGTATACATCGGCGAAGGGccaaagacatcaattgttatGTATACACACCGGGTTATGTACCACAACAGCCGGTGAAACCGAAACCCTCATTTGGTCTCGATACAACAATGGATAGTGTCACACCGCCTCCATTGGTTTTGGGAACGCTACCGGCAGTTTCAGTATCCTCACCATACATGGAGACACCCACAGTAGAGCCTTTGCCGCCAATAGAATTGTTAACATCCAGCAATTTGTCGGCAGATTACAAGAGTGTAACACAAGTGGAGGCAGAGGTGCCTAAACAGCTTTTGGAATCAGCAGAAGTTAGTTCAACACCTACTCCCACCACTACACCGACAGTGGGATTAAAGGAGGAAATTGTAGTTAAATCGGAAAACCCACAACTGCCTTCGTCAATTCAGGAGGTGGAGGTAAAGACAGAGCCCATGATATTGGAAACTGTGCCTAAAATTGAAGATGGTTATGCTTTAATTGGGTCCTTGAAGGTGCAAATTATTGATAATCTATTTCGCTGTCCAGAGGAGGGTTGCTTCAAGAATTTCCGCAAAGAGAATCATTTGCAGATTCATGTCAAACACTATCATCGGAATTTAGTCAaATTACTTGGCGCTTGTCCCAAAATGCTGGATCTCGCCGAAAAACGAACCCATCCCATCGGTCATGATCCCAATGAACCAACGCCTAGGAATCAAATACCCAACCAGCAGTTCTTTGCCAAATTGCATCAACAAGACTTAGAACAGACTAGAGCTCATAGACGCAGTGTGGGCGCTCAGAAAGCACAAACAGAAGTGAGTGTGGACATTAAATCGGAATTGTTAGACGGACAAATAAAAGTTGAGACTGGAGAACAACTAACATCATCTCCAATGCAGGACATATCGGCGATAATAAACTCCACTAATGCTTCGTCAGCATCCATTTTGGACAGTTCTTATATGTCAACTGCAGCGGATGATTCAATGGCAACAGCCAGTGAGTCGGCTCTGCCAGATGTCCCCCCTCTCTCCAAGAAGTCCAGATTTTCACCCTTAAAGAAACCTTCAGGCGCAAGGAAGAGTAATCGTCAACGTACCACAAAGAAATATCTTACAGCTGCCCAAGCAACAGCAGGTGTGGTGAGTCAAAACGCTTCTATTGCGCCAGTAGAGTCCAGTTTCAGTGGTGTCACAGATTTCGAAGAAACACGTCACTCATTCAATGCCACTCCGGAAATTCACAAGGATAGCAAGAGACGTAGAACGAACGCCGCTCCACCAGCCACAACCTTCAGTAGTGCTGAATCCCCCATAACAGCAGATTCTGGTTCCAGTTCTCTGCAGCCCTTATCCACAACTGAAACAGAGAGTGCTGCTCAGTACATCAAAGAAAATGGAGAGCTCATCAAGATTGTAAGCATGCGTCAAGAGGAGATCATAAACTGCCTATGTGGTTATGTGGAAGAAGATGGCTTGATGATCCAATGCGAGCTATGCCTGTGTTGGCAACACGGCATTTGCAATGGCATCAACAAGGAGTCTCAAGTACCCGATAAATATGTTTGCTATATCTGTCGTAATCCCCAAAGGAGCAGGGAATCTGTAAAGTTCAAACACGATCAAGATTGGCTGTATGAAGGCAAATTACCCACAGCCAATTTTCACTCACAAAACGTGGTTTTGGCCAATAAGAGAGCGGAATATCTCAAGCGTTCGCACACCCTTACTGGTAATCTGTTGGAGTTGAAGAACTACATGCATTCACTCAAAGTTAAAATCAATATAGCCAATAATAAATGCCACCCCAAACTATATTTATGGGCTAAGAAGTGGGATGAGGATGTGCTGGACGTAAAAAATGAAACTGATATTGAATCGAAGACCAGTATGTCACCTAACGCAAAGAAAATTAAGTCGGAACCCTCAACACCAGTACCCATTATACCACAACCCGAGGCACCCATAGATCCAGTGGAGTGCCAACAGCGTTTGCAGGAACATATTCGAATACAACAGCATTTGGTAATGCAACGTCTGAATGACATAGAAGCGGCCATAGATGttttggatCAAGAAGACGATTTACCCGATCTTCATGACGCTGATTTGGGTGCTACTAAAGACGCTTTGGCCGCCTTCATCAAAGAGCTGGATACATTCAAGAAAATTGGCAAATTAAATGCCTTGGAGCATACTAAACACGCTATTAAGAATCCCGTATCTtcgatttaa
- Protein Sequence
- MGRRCCIESCLSTSRLPEHHGVTYHSFPVDENTRAIWIRNTRIDARRNITKSVLVCSRHFRRADFQPQRSGKYLLKQKVFPTVFPWGKVEANQIEEDLEFLSSTSSATAAAPTNLLSATASSVDEDTKATVAATVAQIMAQTAELNAQAALKAEKSFEAGDDAAAPDAGHGSPTGVKFEPVTTFNPGARLEAQDFDRIWHSARIVEVDNDDREVLIKFEKTGKVKLPIVGTEEWIPMNSSRLRQKISTKPILNFNVEDKCLARWSGPRKFPGTVKKVLPNDTYEILFDDGYIKNVRAIHMNKVMPADAEVVVENPAVEGSNAEVSPNASSTPIAGTPLLSPGIKRPASSGTPSSSGKKKRAPSSARKDWPLLDLSKLDLASLNLPEVPKDGEWACHWVNDQPIGREGFLLVGEHRKPTVVVEDWRLPPGWIKHMYQRSNVLGKWDVILVTPTGKRFRSKADLKTFLEEQGQVYNPDIYDFSIHRRRAKDINCYVYTPGYVPQQPVKPKPSFGLDTTMDSVTPPPLVLGTLPAVSVSSPYMETPTVEPLPPIELLTSSNLSADYKSVTQVEAEVPKQLLESAEVSSTPTPTTTPTVGLKEEIVVKSENPQLPSSIQEVEVKTEPMILETVPKIEDGYALIGSLKVQIIDNLFRCPEEGCFKNFRKENHLQIHVKHYHRNLVKLLGACPKMLDLAEKRTHPIGHDPNEPTPRNQIPNQQFFAKLHQQDLEQTRAHRRSVGAQKAQTEVSVDIKSELLDGQIKVETGEQLTSSPMQDISAIINSTNASSASILDSSYMSTAADDSMATASESALPDVPPLSKKSRFSPLKKPSGARKSNRQRTTKKYLTAAQATAGVVSQNASIAPVESSFSGVTDFEETRHSFNATPEIHKDSKRRRTNAAPPATTFSSAESPITADSGSSSLQPLSTTETESAAQYIKENGELIKIVSMRQEEIINCLCGYVEEDGLMIQCELCLCWQHGICNGINKESQVPDKYVCYICRNPQRSRESVKFKHDQDWLYEGKLPTANFHSQNVVLANKRAEYLKRSHTLTGNLLELKNYMHSLKVKINIANNKCHPKLYLWAKKWDEDVLDVKNETDIESKTSMSPNAKKIKSEPSTPVPIIPQPEAPIDPVECQQRLQEHIRIQQHLVMQRLNDIEAAIDVLDQEDDLPDLHDADLGATKDALAAFIKELDTFKKIGKLNALEHTKHAIKNPVSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01175153;
- 90% Identity
- iTF_01175153;
- 80% Identity
- iTF_01175153;