Basic Information

Insect: Phania funesta
Gene Symbol: -
Assembly: GCA_963932375.1
Location: OZ010654.1:64113637-64120209[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.5 1.6e+04 -3.1 0.0 27 48 28 49 24 54 0.74

2 13 0.0069 43 5.1 0.1 23 48 55 80 49 85 0.89

3 13 0.00018 1.1 10.2 1.6 27 48 89 110 86 115 0.93

4 13 0.3 1.9e+03 -0.1 0.1 22 45 113 136 110 140 0.84

5 13 0.048 3e+02 2.4 0.1 24 48 143 167 136 172 0.83

6 13 2.3 1.4e+04 -3.0 0.0 4 24 185 205 184 207 0.79

7 13 0.19 1.2e+03 0.5 0.0 11 48 230 270 224 276 0.70

8 13 0.48 3e+03 -0.8 0.1 23 47 276 300 262 303 0.82

9 13 0.00039 2.5 9.1 1.1 23 48 306 331 301 336 0.90

10 13 0.2 1.3e+03 0.4 0.0 22 45 334 357 332 362 0.85

11 13 0.051 3.2e+02 2.3 0.1 24 48 364 388 357 392 0.82

12 13 1.9e-07 0.0012 19.7 0.1 22 46 439 463 430 467 0.83

13 13 0.0039 25 5.9 0.4 21 48 468 495 464 499 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.5	1.6e+04	-3.1	0.0	27	48	28	49	24	54	0.74
2	13	0.0069	43	5.1	0.1	23	48	55	80	49	85	0.89
3	13	0.00018	1.1	10.2	1.6	27	48	89	110	86	115	0.93
4	13	0.3	1.9e+03	-0.1	0.1	22	45	113	136	110	140	0.84
5	13	0.048	3e+02	2.4	0.1	24	48	143	167	136	172	0.83
6	13	2.3	1.4e+04	-3.0	0.0	4	24	185	205	184	207	0.79
7	13	0.19	1.2e+03	0.5	0.0	11	48	230	270	224	276	0.70
8	13	0.48	3e+03	-0.8	0.1	23	47	276	300	262	303	0.82
9	13	0.00039	2.5	9.1	1.1	23	48	306	331	301	336	0.90
10	13	0.2	1.3e+03	0.4	0.0	22	45	334	357	332	362	0.85
11	13	0.051	3.2e+02	2.3	0.1	24	48	364	388	357	392	0.82
12	13	1.9e-07	0.0012	19.7	0.1	22	46	439	463	430	467	0.83
13	13	0.0039	25	5.9	0.4	21	48	468	495	464	499	0.92

Sequence Information

Coding Sequence: ATGGTTGGTTATGACGCATGGccatctaaaactaaactaCAAAAGCACATGTATTCCCATGATACAAATAGACAAAAAATATGCGATCAGTgtggtaaaatatttgcatgcaATTCCAGCATGCGTAAACATGTAGATGCTGAACATTCCGAAGTTAAACCTGAACCACAACAGTGCAAAATATGCAATACTTGGTACCGAAATTTGTCTGGCTTGCGGACGCATATGAAGTTTATGCATGAGAATATTGGCGGAGAACATCGTTGTCAGATCTGCAGTAAAGTATCAACAAATGCTAGAGCTTTAAGAAGGCACATTTATTTGAATCATGAATGTGAACGAAAATTTAAGTGCCACATGTGTGACAAGGCATTCAAACGAGAACAAGATTTGAGAGAACATATCTCTGTACACACCGGCGAGGCATTGTACACTTGCCCCAATTGCCCTATGACATTTTCTTCCAGCGCGAATATGTATAAACATCGTCAACGCTTGCATAAAGCCGAGTATGCTGCTCATAAGCAACAGCCATTGGCATTAAACATAATAAAGCAAGCAAAATCTGTACCGAATACAGTGCGTACTAAGAGGCGTATGATTGTTGAACTTCCATCAGCTGAAATTGTTACGCCTCCCACTTCTGTTATGTTAAATCCCCAGCTAGTCTTAGCATCACAatTACCATCTGAAACTAAGTTACGTGAACACATGCACAGTCATGATCCTACAAAACGTCAGATTTGTGATAAATGTggtaaaacgtttaaaaataattacaacatGAAAAAGCATGAAGAATCGGAACATTCTGAGGTAAAACCCGAACCTCAACAATGTATCCTTTGTAATACATGGTATCGCAACATATCTGGCTTAAAGACCCACATGAAAAATATGCACGATGATATGGGGCAAGAACACCGTTGTAACATTTGCAATAAAGTGTCGACTACACAACGTGCTCTTAAgagacatatttatttaaatcataaatgtgaaaagaaattcaaGTGTAACATGTGTGAGAAGGCATTTAAGAGAGGTCAAGATTTAAGAGAACATATATCTGTGCATACGGGCGAGGCATTATATACTTGTCCCAATTGTCCCATGACCTTTTCGTCAAGTGCCAATATGTATAAACATCGTCAGCGTTTACACAAGGCTGAGTATGCTGCATACAAACAACAATCTATGCCCCCTAATATAATCAAACAGGCTAAATCGGGCGCTGCTAATAAAATACGAACCAAAAGGCGTTTTATGGGTTTGTCGATTAAATATCAGCATTCGGAAAACCCACGTAAGGATAGAGAACCCCAACAGTGTCCTATTTGTTACAAAGTGTTGAGAGGCAATAAAGGACTAAGAGCACAcatgaaaaatatacatgatgATGGTGAACAGGAGCATCGTTGCAAAATTTGTAATCATGTTTCGACAACCGCTAAAGGTTTACGAGTGCATGAAATATTTCGCCACGAAAAGGAAAGAAAACACAAGTGTTCTTTGTGTGACAAGGCATTTAAGCGGCCTCTAGATTTGaaagaacATATTGCTACACACACAGGCATGTCCTTGTATAAATGTGCTGAATGTCAAGCAACATTTAAGTCAAATTCTAACTACTATCATCACAGAAGACGTTTTCATAGTGGAAAATCAAAACGGGAATTAATGATTAAAATCGATGATTGTCCTTAG
Protein Sequence: MVGYDAWPSKTKLQKHMYSHDTNRQKICDQCGKIFACNSSMRKHVDAEHSEVKPEPQQCKICNTWYRNLSGLRTHMKFMHENIGGEHRCQICSKVSTNARALRRHIYLNHECERKFKCHMCDKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSVPNTVRTKRRMIVELPSAEIVTPPTSVMLNPQLVLASQLPSETKLREHMHSHDPTKRQICDKCGKTFKNNYNMKKHEESEHSEVKPEPQQCILCNTWYRNISGLKTHMKNMHDDMGQEHRCNICNKVSTTQRALKRHIYLNHKCEKKFKCNMCEKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAYKQQSMPPNIIKQAKSGAANKIRTKRRFMGLSIKYQHSENPRKDREPQQCPICYKVLRGNKGLRAHMKNIHDDGEQEHRCKICNHVSTTAKGLRVHEIFRHEKERKHKCSLCDKAFKRPLDLKEHIATHTGMSLYKCAECQATFKSNSNYYHHRRRFHSGKSKRELMIKIDDCP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01174427;
90% Identity: iTF_01174427;
80% Identity: iTF_01174427;