Basic Information

Insect: Phalera bucephala
Gene Symbol: RREB1
Assembly: GCA_905147815.1
Location: LR990631.1:9514777-9534804[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.13 18 7.5 0.7 1 23 93 116 93 116 0.94

2 12 7.5 1.1e+03 1.9 0.5 1 11 158 168 158 179 0.82

3 12 0.023 3.2 9.9 0.1 1 23 306 328 306 328 0.97

4 12 0.0012 0.17 13.9 0.4 1 23 337 359 337 359 0.99

5 12 0.00076 0.11 14.5 2.0 1 23 365 388 365 388 0.97

6 12 0.0031 0.43 12.6 1.6 1 23 731 754 731 754 0.96

7 12 0.00026 0.036 16.0 1.3 2 23 945 966 944 966 0.97

8 12 0.026 3.7 9.7 5.3 1 23 972 995 972 995 0.97

9 12 0.081 11 8.1 1.5 1 23 1027 1051 1027 1051 0.93

10 12 0.041 5.8 9.1 0.2 1 23 1071 1094 1071 1094 0.97

11 12 0.023 3.3 9.8 0.3 2 23 1134 1155 1133 1155 0.92

12 12 0.029 4.1 9.5 5.3 1 23 1161 1183 1161 1183 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.13	18	7.5	0.7	1	23	93	116	93	116	0.94
2	12	7.5	1.1e+03	1.9	0.5	1	11	158	168	158	179	0.82
3	12	0.023	3.2	9.9	0.1	1	23	306	328	306	328	0.97
4	12	0.0012	0.17	13.9	0.4	1	23	337	359	337	359	0.99
5	12	0.00076	0.11	14.5	2.0	1	23	365	388	365	388	0.97
6	12	0.0031	0.43	12.6	1.6	1	23	731	754	731	754	0.96
7	12	0.00026	0.036	16.0	1.3	2	23	945	966	944	966	0.97
8	12	0.026	3.7	9.7	5.3	1	23	972	995	972	995	0.97
9	12	0.081	11	8.1	1.5	1	23	1027	1051	1027	1051	0.93
10	12	0.041	5.8	9.1	0.2	1	23	1071	1094	1071	1094	0.97
11	12	0.023	3.3	9.8	0.3	2	23	1134	1155	1133	1155	0.92
12	12	0.029	4.1	9.5	5.3	1	23	1161	1183	1161	1183	0.97

Sequence Information

Coding Sequence: ATGCAGGGCGCCGCCAGCGCCCCCGCGCCCCCCGCGGCCGAGCCGCCATCTTCGCAACAAATCAAAACAGAGGAGGTCATCCGCGAAGCGAAAATCGAGGCCGTCGAAGAAATGGAAAGAGTTAAAACTGAAAATCAAGAACTCAGAGCTACTCGGACGATGAGCATAGATAGTGACAACCGCTCAGACAGGAGCGAGGAAGACGAGCGAAGGGCTCGGAAAAGGGCCGCCTCAACATCCCCTTCCCCTATCCCGATGGACAAAAGAACAGCTAGATTCGAGTGCCCGAAATGCAGGCAGCGATTCGATTCTATAAACGCGTTCGACCTCCATCGGTTTACCGCACACGGGGACGACACAAAGACAGGATTCGATGACTTAACATTCGTTGATTTTTCCAGCAAAAAGTTTCCTGAAATTGCACGTGGAGTCTGCGAGAGGAATCCTCATATTTCCATCACTGAACAGCGCTTCAGATGCGATCTATGCCCCAGAGATTTCCCATGCGGCCAGGCCTTGGACATACATAGGAAAACATGCACGACAAACACTAGAATTCCGAGCCCAGAACGAGAGAGAAGAGAGGATTTCTTTGCCAAACTGGACTTACGAAACAGATCGTTTGGTATTCCTGGCACGCTCACCCCGCCGATGGAAAGGTTCACGCCAAAATATGACGATAACCATCTATCCACAAACGGCATAAGGCATATCGATAGCGCCCGCGACTTGGCAGACATTCAATCGATCTTGAACGTCACGTCAGCCGGCAGCATATTAGAAAGACTAACCGGCAGAGTCGCTTTAGAAAGTGCTGTGCTCACACCACCGGATACGATAGTTAAAGAACGTGACCAGGAGGAAACTCAAGACAATTTCGCAGCAGAGTTTCGTAGGATGAAGCTGAGGGGAGAATTCCCTTGCAGGTTGTGTCCGGCTAAATTCCCCAATCTCAGAGCCTTAAAAGGCCATAACAGAGTACATCTAAGTGGGACGGGGCCTGGCCCTTATCAATGCAATATGTGTCCCCACGCGTCTTTAGATAAGGCGGCCTTAGTACGTCATATGCGCACCCATAACGGAGATCGGCCTTACGAGTGTGCAGTATGCAACTACGCTTTTACGACTAAAGCGAACTGCGAACGACACTTGCGAAACCGACACGCCAAAGTTACGAGGGAAGATGTGAAACGATCCATCATTTATCATCCGTCAGAAGACCCTAATAACGATGAAGTGAACTCTAAACTGGCTAGAGATGAAGTGAAGAGGTCCCTCGCTTTCCACACCCCAGAAGTCGATAGACGAAATGAGAACACAGGCGGCAACACACCGCTAACTCACTTCCCTCAGACTTTCATAACTGATAGACATCCAGTCGCGTCTTTATCAGCAAAACCATTAAATGATGCTCCGTTAACTCCAAGAGATCACGAGCAACCGGCGCCTCGAATCAAAGTGAAGGGTATTGGTCAGCTGACGCAAATACCCGAGTTCAGACCTGCAGAACTATCGTTTAAGAACGACGTCCAACCGGAGACCTATGATGAAGAAACGCCTGTAGACTTGAGCACGAGTGACAATAACAGTTGTGACGTGTTAGACCTTAGTAAGAAGAAACGTGATGATCTTGAAGAGCCTAAAACCCCATCGAGACCAACTTTCGAGCCCAACCCTATATCAATAACAGCTTTTGAAAAGACGAGATTCCTTTTGGCGCAACAAAGATTCTTCGAGTCATCTTCTTTACCAAAAATCGACCCAGCCTACTACGCTTCTCAGCTATCCCAACTTTACGCCGGCGCAGTCCCCGGACTACCTGGCCTACCCTTGCCACCGTCCTTTCCTATTGCTCCATACTTACTCCAGCCATCTTTTTTTTCTCACCCAACTGATTCGCAAGAACTTGCCGAAATAAAACAGCGTATACAGAAAGAAATAATTCGAGGACTGAGCATGTCCGGTGGTAGTTTAGTAGCAAGCGACCAAGAAACCCCAACTAAACTAGAGCCTGAAGAAGAAGAGCAAAAACCACCGCGATCAGTGTCTCCTGTGCCATCCCCCCACCCAGATTCTCCTAGGCCAATGAATAATACACTCGTCCCGCAAACGGACTCAGTAAAAATGGTCATCAAAAATGGCATACTAATGCCAAAACAAAAGCAGCGACGCTACCGTACGGAAAGACCATTTTCTTGCTCGCAGTGTTCTGCCCGATTCACGCTTAGGTCTAACATGGAACGTCATGTGAAACAGCAACACCCTCAGCACTGGAGTGTTAGGAGACCAGCTCCAAGAGCTCCACCGCCCTATCCGATTTCTGACACTTTAGGTGACCGTATGAAGTTCGCACTTCTAGCTCGCCACCTGGAAAGGCCGCTGCAACAAAGTGAAAGATCTCCCATCAGACGGGATTCCGACGAAGTAGCCGACAACGAAGAAGATGAAGACGACACCCTAGTTATAGACGAGGAACCAGAGCAAGATAAGCCTGAAGACCACACGGCAGCACGCAGAGCGGCCGCAGAAATCCTCATGGAATCTTGCCAGCAAGAAATTAACAAGGATTTTGATTTGAAAATCGCtggaaacttaataaataagcCTTTGCCTATTCCTACGGAGAAACCCGAACCTGGAACTGATCCTATCCCACCGGAACTGCCTATACCTGTGGTGCCTACACGCAGTGATGAAGAGGAAGATGAGGAAGGCTTGGTTGCGTCGACCAGTGAAGGCAATAATTCTGGAAGTGATGAAAATAAATCTGAAACAGACACAGCTCAACCACCAAAAAAGAAGTCAGCGTACAGCCTCGCCCCAAACCGAGTTTCCTGTCCCTACTGCCATCGGAAGTTTCCCTGGTCATCCTCCCTCCGTCGCCACGTCCTCACGCACACGGGACAGAAGCCCTTCAAATGCCCCCACTGCCCTTTACTATTCACCACCAAATCGAACTGTGACCGTCACCTTTTACGGAAACACGGGGGATCAGCTAGAGCTATTCTCGCAGAACCCATCCCAGAAACAGTAGCTCCACCATTAACAATTGATACGCGAACTGTACCTGAGAGACCGTTCAAATGCGCTACTTGTCCAACCAGCACTTTTTCGTCAATGGAAACTTTGAAGAAGCACATGTCTTCGAGACACGGCGACTCACAGCCTGAATCGCCTATTCCTGAAGAGGAAAATTCTGATGGGCTAGTTTTCAAGTGTCATTTGTGTGAGGGCTCGTTTGGAGATAGGAGCGGTGCGCTAGCGCATTTGGCAACGACGCACACGTCGGAATATGATCAGTTGGTGAGCAAAGGAGCTTTGGATGCGGCTAGTGATAGAAGCGAAAGTGCTGATGATGACGAGCGAGGAAAGTTTCCGGATCATGCTAATAGAAAGGTGGTATGCGCATTCTGCATTCGTCGTTTCTGGTCGGCCGAGGACCTCCGACGTCACATGCGGACTCACTCCGGAGAGAGGCCATTCGCCTGCGATCTGTGCAGACGCCGGTTTACTTTGAAGCATAGTATGCTACGGCACCGCAAGAAGCACCGAGATGAGATCACAGACGATGAGGAGGTCACACCGCCTAGTACGCCTTTGGAGAACAACCTTGCTACTAATGGATACCGTTACCAAGACGACGACGGCTCCGGCACTGAAATAGGAAATAACATCAACAACAACAACTCTCCGCCCTCAGTTCCCTACGAGAAGAAGCTCAAACTAGACATGACATCACGAAAATACTCCTCCGAAGCCGAGAATGACACCGAAAACAACGACCTGATTGGTAAACTACTCGGTATTCCAGACAAGACTATTAATAAACTGTTATCTTCAGCCGATGAAGCCGCTAAAATCCTGGGAGTAAAAAAATGA
Protein Sequence: MQGAASAPAPPAAEPPSSQQIKTEEVIREAKIEAVEEMERVKTENQELRATRTMSIDSDNRSDRSEEDERRARKRAASTSPSPIPMDKRTARFECPKCRQRFDSINAFDLHRFTAHGDDTKTGFDDLTFVDFSSKKFPEIARGVCERNPHISITEQRFRCDLCPRDFPCGQALDIHRKTCTTNTRIPSPERERREDFFAKLDLRNRSFGIPGTLTPPMERFTPKYDDNHLSTNGIRHIDSARDLADIQSILNVTSAGSILERLTGRVALESAVLTPPDTIVKERDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEVDRRNENTGGNTPLTHFPQTFITDRHPVASLSAKPLNDAPLTPRDHEQPAPRIKVKGIGQLTQIPEFRPAELSFKNDVQPETYDEETPVDLSTSDNNSCDVLDLSKKKRDDLEEPKTPSRPTFEPNPISITAFEKTRFLLAQQRFFESSSLPKIDPAYYASQLSQLYAGAVPGLPGLPLPPSFPIAPYLLQPSFFSHPTDSQELAEIKQRIQKEIIRGLSMSGGSLVASDQETPTKLEPEEEEQKPPRSVSPVPSPHPDSPRPMNNTLVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPISDTLGDRMKFALLARHLERPLQQSERSPIRRDSDEVADNEEDEDDTLVIDEEPEQDKPEDHTAARRAAAEILMESCQQEINKDFDLKIAGNLINKPLPIPTEKPEPGTDPIPPELPIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETVAPPLTIDTRTVPERPFKCATCPTSTFSSMETLKKHMSSRHGDSQPESPIPEEENSDGLVFKCHLCEGSFGDRSGALAHLATTHTSEYDQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEVTPPSTPLENNLATNGYRYQDDDGSGTEIGNNINNNNSPPSVPYEKKLKLDMTSRKYSSEAENDTENNDLIGKLLGIPDKTINKLLSSADEAAKILGVKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01426187;
90% Identity: iTF_01073973;
80% Identity: -