Basic Information

Insect: Notodonta dromedarius
Gene Symbol: RREB1
Assembly: GCA_905147325.1
Location: LR990183.1:3969075-3987332[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.069 4.7 8.1 0.5 1 23 92 115 92 115 0.94

2 11 0.019 1.3 9.9 0.1 1 23 305 327 305 327 0.97

3 11 0.001 0.069 13.9 0.4 1 23 336 358 336 358 0.99

4 11 0.00063 0.043 14.5 2.0 1 23 364 387 364 387 0.97

5 11 0.0026 0.17 12.6 1.6 1 23 729 752 729 752 0.96

6 11 0.00021 0.014 16.0 1.3 2 23 943 964 942 964 0.97

7 11 0.022 1.5 9.7 5.3 1 23 970 993 970 993 0.97

8 11 0.52 35 5.3 3.4 1 23 1025 1049 1025 1049 0.93

9 11 0.27 18 6.3 0.1 1 21 1071 1091 1071 1094 0.83

10 11 0.0016 0.11 13.3 0.2 2 23 1134 1155 1133 1155 0.96

11 11 0.024 1.6 9.5 5.3 1 23 1161 1183 1161 1183 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.069	4.7	8.1	0.5	1	23	92	115	92	115	0.94
2	11	0.019	1.3	9.9	0.1	1	23	305	327	305	327	0.97
3	11	0.001	0.069	13.9	0.4	1	23	336	358	336	358	0.99
4	11	0.00063	0.043	14.5	2.0	1	23	364	387	364	387	0.97
5	11	0.0026	0.17	12.6	1.6	1	23	729	752	729	752	0.96
6	11	0.00021	0.014	16.0	1.3	2	23	943	964	942	964	0.97
7	11	0.022	1.5	9.7	5.3	1	23	970	993	970	993	0.97
8	11	0.52	35	5.3	3.4	1	23	1025	1049	1025	1049	0.93
9	11	0.27	18	6.3	0.1	1	21	1071	1091	1071	1094	0.83
10	11	0.0016	0.11	13.3	0.2	2	23	1134	1155	1133	1155	0.96
11	11	0.024	1.6	9.5	5.3	1	23	1161	1183	1161	1183	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCCGCCAACGCCCCCGCGCCCCCCGCGGCTGAGCCGCCGTCCTCACAACAAATCAAAACAGAGGAGGTCATCAGGGAGGCAAAAATTGACGCCGACGAGAATATGGACGGGGTTAAAATGGAGAGCCGAGAACTCAGAGCGACCAGGACCACAAGTATAGACAGCGATAACCGCTCAGATAGAAGCGAGGAAGATGAAAGGAGGGCCCGCAAACGGGCAGCATCGACCTCTCCATCCCCCATCCCCATGGACAAAACGGCCAGATTCGAGTGTCCCAAATGCAGGCAGCGGTTCGACTCCATTAACGCATTCGACATCCATCGGTTCACAGCCCACGGGGACGACACAAAAACCGGTTTCGATGACTTAACGTTCGTCGATTTCTCCAGCAAAAAGTTCCCCGAAATCGCCCGCGGAGTTTGCGAGAGGAACCAACACATTTCGATCACAGAACAGCGGTTCAGATGCGATCTGTGTTCTAGGGACTTCCCGTGCGGTCAAGCCCTGGATATACACAGGAAGACTTGCGCTGCAACCACTCGAATCCAGAGTCCCGAGCGAGATAGAAGGGAAGATTTCTTCGCAAAATTAGACCTTAGGAACCGGTCTTTCGGTATACCCGGCACGCTCACCCCGCCGATGGAGCGGTTCACGCCCAAATACGACGATGGGCATCTAACCACGAATGGTATACGGCATATCGATGCCGCCCGCGACTTGGCAGACATCCAATCGATCTTGAACGTGACGTCAGCCGGCAGCATTTTAGAAAGACTGACCGGCAGAGTCGCTTTAGAAAGCGCCGTACTCACGCCTCCAGATACGATAGCCAAGGAGCGTGATCAGGAGGAGACTCAAGATAACTTCGCAGCCGAGTTTAGGAGGATGAAACTCCGCGGAGAATTCCCTTGCAGACTGTGCCCTGCCAAGTTTCCTAATCTGAGGGCTTTAAAAGGGCATAACCGAGTTCACTTAAGTGGAACAGGGCCTGGGCCTTATCAATGCAATATGTGTCCCCACGCGTCTTTAGATAAGGCGGCGCTCGTGCGTCACATGCGCACCCACAACGGAGACAGGCCTTACGAGTGTGCAGTTTGCAATTACGCGTTCACAACTAAGGCGAATTGCGAGCGTCACCTGAGAAACAGACACGCGAAGGTGACGAGAGAAGATGTCAAACGGTCCATCATTTATCACCCGTCAGAAGACCCTAACAACGATGAAGTAAACTCTAAACTCGCTAGAGACGAAGTGAAGAGATCCCTCGCGTTCCACACTCCTGAAATCGATAGACGAAATGAGAACACTGGACGTAACACGCCTTTAACTCACTTCACCCCGAGTTTTATGACTGACAGACACCCAGTCGCATCTTTGAACGTAAAACCAATGACTGATTCGCCTATAATACCTAGGGATACTGAACAACCTGTTCCTCGAATCAAAGTCAAGGGTATCGGTCAGTTGACCCAAATTCCCGAATACAGGCCTCCAGAGCTGTCGTTCAAAAATGAAATTAAACCAGAGATGTATGACGAAGAAACACCTGTAGATTTGAGTACCAGCGACAATAACAGTTGCGATGTGTTAGACCTCAGTAAAAAGAAACGTGATGTTACTGAGGAACCCAAAGTACAATCGCGACCGTTCGAGCCCAGCCCTGCATCAGTTGCGGCCTTTGAAAAAACTAGATTCTTGCTTGCTCAGCAGAGATTCTTCGAATCGTCTTCACTGCCCAAAATCGACCCAGCGTACTATGCCTCACAACTCTCTCAAATCTACGCTGGTACTGTCCCGGGTCTACCCGGTTTACCTTTGCCGCCGTCCTTTCCTATCGCCCCCTACTTACTTCAACCCTCTTTTTTTCCTCACCCAACTGATTCTCAAGAACTTGCCGAAATAAAACAGCGTATACACAAAGAAATCATTCGGGGATTGAGCATGTCTGGAGGTAGTTTAGTCGCTAGTGACCAGGAGACTCCTACTAAGATGGAGCCCGAAGAGGAAGATCAGAAACCACAGCAAGTGTTGTCCCCCGAACCTTCTCCACACCCTGAATCTCCCCGCCCGATAAACAACACTTTAGTCCCTCAAACGGACTCCGTAAAAATGGTTATCAAAAACGGAGTGTTGATGCCTAAACAAAAACAGCGACGGTACCGTACTGAGCGACCGTTTTCATGCTCTCAGTGCTCCGCGCGGTTCACCCTCCGATCCAATATGGAACGTCATGTGAAACAGCAACATCCTCAACACTGGAGTGTTAGAAGACCAGCTCCTAGGGCTCCACCGCCGTATCCAACATCAGACACGTTGTCTGACCGCATGAAATTCGCTTTGCTGGCCCGTCATCTCGAAAGACCATTGCAGCAATCAGATCGGTCTCCTATAAGACGGGATTCCGATGAAGTGGCTGACAATGAAGAAGACGAAGATGATACTCTAGTTATAGACGAGGAACCGGAAGATAAAGCTGAAGACCATACGGCTGCACGGAGAGCGGCCGCAGAAATCCTTATGGCGACTTGCCAACAAGAGATTCACAAAGATTTCGACCTTAAAATCGCTGGGAATTTGATAAATAAGCCTGTGCCTATAATCACGGAGAAAACTGAGGCTGGGACTGATCCTATGCCATCTCAGGAACTGCTCATCCCCGTGGTACCCACTCGGAGTGATGAGGAGGAGGATGAAGAAGGATTAGTGGCGTCGACCAGTGAAGGGAATATTTCCGGAAGCGATGAGAATAAATCCGAAAGTGACACAGCCCAGCCAGCAAAGAAGAAATCAGCATACAGCCTCGCACCGAACAGAGTATCATGTCCTTACTGCCATCGCAAGTTTCCCTGGTCATCGTCCCTCCGCCGCCACGTCCTCACGCACACCGGCCAGAAGCCCTTCAAATGCCCTCACTGCCCTTTACTCTTCACGACCAAATCGAACTGCGATCGTCATTTGCTGAGAAAACATGGAGGATCTGCTAGGGCTATACTCGCCGAACCAATCCCCGAAACGCTCTCTCCACCACAGATTGCTGACACTCGCGCGGTCCCAGAAAGACCTTTCAAATGCACCTCATGCCCCACAAGCACCTTCTCATCAATTGAGACTTTGAAGAAGCATATTTGTTCAAGACATGGATCCGATTCCCAGCCTGGTTCGCCTACACCAGAAGTTGAGGACAACTCCGACGGCTTGGTCTTCAAATGTCACTTGTGCGAGGCGTCTTTCGGGGACAGGAGTGGTTCATTAGCCCATCTAGCAGCTGGACACGCCGTAGAGTATGAGCAGTTAGTTAGCAAGGGGGCGCTGGATGCGGCGAGTGATAGGAGCGAGAGCGCAGACGACGATGACAGGGGGAAGTTCCCGGATCATGCTAACAGAAAGGTCGTATGCGCATTCTGCGTTCGTCGGTTCTGGTCGGCGGAAGACCTTCGCCGTCACATGCGGACGCACTCCGGGGAGCGCCCGTTCGCCTGCGACTTGTGCAGACGACGTTTCACGCTTAAACACAGCATGCTGAGACACCGCAAGAAGCACAGAGATGAAATCACGGATGATGAGGAGCCCTCGCCTCCTAACACGCCTCTGGAAGACAGCACGCCTAATGGGTACCGTTACCAGGACGACGACGGCTCAGGCAACGAAATCCCAAGCAACGTGAACAACAACAACTCCCCACCATCAGTCCCCTACGAGAAGAAGCTCAAATTGGATATGACGTCACGCAAATACTCCTCAGAAGCTGACAACGACGCGGAAAACAACGACCTCATCGGTAAACTGCTCGGTATTCCCGATAAAACCATCAATAAACTGCTGTCGTCGGCGGACGAGGCTGCCAAAATACTGGGAGTGAACAAATGA
Protein Sequence: MQGAANAPAPPAAEPPSSQQIKTEEVIREAKIDADENMDGVKMESRELRATRTTSIDSDNRSDRSEEDERRARKRAASTSPSPIPMDKTARFECPKCRQRFDSINAFDIHRFTAHGDDTKTGFDDLTFVDFSSKKFPEIARGVCERNQHISITEQRFRCDLCSRDFPCGQALDIHRKTCAATTRIQSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKYDDGHLTTNGIRHIDAARDLADIQSILNVTSAGSILERLTGRVALESAVLTPPDTIAKERDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEIDRRNENTGRNTPLTHFTPSFMTDRHPVASLNVKPMTDSPIIPRDTEQPVPRIKVKGIGQLTQIPEYRPPELSFKNEIKPEMYDEETPVDLSTSDNNSCDVLDLSKKKRDVTEEPKVQSRPFEPSPASVAAFEKTRFLLAQQRFFESSSLPKIDPAYYASQLSQIYAGTVPGLPGLPLPPSFPIAPYLLQPSFFPHPTDSQELAEIKQRIHKEIIRGLSMSGGSLVASDQETPTKMEPEEEDQKPQQVLSPEPSPHPESPRPINNTLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTSDTLSDRMKFALLARHLERPLQQSDRSPIRRDSDEVADNEEDEDDTLVIDEEPEDKAEDHTAARRAAAEILMATCQQEIHKDFDLKIAGNLINKPVPIITEKTEAGTDPMPSQELLIPVVPTRSDEEEDEEGLVASTSEGNISGSDENKSESDTAQPAKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETLSPPQIADTRAVPERPFKCTSCPTSTFSSIETLKKHICSRHGSDSQPGSPTPEVEDNSDGLVFKCHLCEASFGDRSGSLAHLAAGHAVEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEPSPPNTPLEDSTPNGYRYQDDDGSGNEIPSNVNNNNSPPSVPYEKKLKLDMTSRKYSSEADNDAENNDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01426187;
90% Identity: iTF_00622329; iTF_01173674;
80% Identity: -