Pchl028214.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621218.1:2929050-2931855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.11 10 7.6 0.9 1 23 28 50 28 50 0.97 2 20 0.026 2.3 9.7 0.3 2 23 78 100 77 100 0.96 3 20 0.0044 0.4 12.1 1.0 2 23 124 145 123 145 0.96 4 20 0.021 1.9 9.9 0.5 2 23 149 170 148 170 0.96 5 20 0.028 2.5 9.5 5.0 1 23 175 198 175 198 0.96 6 20 0.42 38 5.8 3.1 2 23 210 232 209 232 0.93 7 20 0.0012 0.11 13.8 0.6 1 23 238 261 238 261 0.96 8 20 2.4e-05 0.0022 19.2 1.6 2 23 266 287 265 287 0.96 9 20 0.00028 0.025 15.9 2.2 1 23 293 315 293 315 0.97 10 20 9.5e-05 0.0086 17.3 1.2 1 23 321 344 321 344 0.97 11 20 0.52 47 5.5 6.6 1 23 398 420 398 420 0.98 12 20 0.019 1.7 10.1 0.1 2 23 448 470 447 470 0.95 13 20 3.2e-05 0.0029 18.8 3.9 1 23 493 515 493 515 0.98 14 20 0.092 8.3 7.9 0.3 2 23 520 541 519 541 0.95 15 20 0.00024 0.022 16.0 0.9 1 23 546 569 546 569 0.95 16 20 0.37 33 6.0 3.2 2 23 579 601 578 601 0.88 17 20 0.00015 0.014 16.7 0.4 1 23 607 630 607 630 0.97 18 20 1.2 1.1e+02 4.4 6.0 2 20 635 653 634 656 0.92 19 20 8e-05 0.0072 17.5 7.9 1 23 662 684 662 684 0.97 20 20 0.00016 0.014 16.6 0.3 1 23 693 716 693 716 0.96
Sequence Information
- Coding Sequence
- ATGACGAAGTCCGAGCGGCAGAACGTCGCCACCTTCCTCGAATTCACAACCGTCAAGCCCTTCTATTATCAACAAGCAAACTTCAAATGCTTTTATTGCAGCGAGATCTTTCCAGAAGTGCACGCAGTCCTTCGACACACAGAGTCCCACGGGATGCCCAACAGATCCTCTCTGCTGAAGCAATATTTACGAAAAGGCAAGAGAGTGATCAAAGTCGACATATCAGACCTTAAGTGCAGGATCTGCGAGTTAAAATATTCAGAACTAGACGATATCAGAAAGCATCTCATAACTACACATAAGAAAGAATTTAACGCAGCCGGAAACGGTCTGATGGCCTATAATCTCAGCACGACCACCGGCCTCCTGTCTTGCTACAAATGCGCAAAAGAATTCAACTCCTTCTTCGTATTAAACCGGCATATGAACGTCCATTTCAACGTGGTGTGCGAGACATGTGGCTTGGGCTTCATGTCTCACCAACGGCTGACTAACCACAGGATCGTACACCAAAATGGCGCCCACAAATGCGAGAGGTGTCACCAAGTGTTCCCAACAAAGTTGAAGCTGCGATACCACGTCATCAAAAGGCATGAAGTTGCCAATGTAAAGAAGCTGAAACCTCTCAAATGTCCGCAGTGTTTCGAGCGGTTCTCTGAGCATTACAAGAAGATGACGCATTTGAAAGCAACTCACGGCATCTCTTTTACCTTTGAGTGTCAAACTTGTAAAGCGGTTTTCCCGACGAGGAGAGCTCTAACCGAGCATACGACAAAGCTGCATACCCAAAAAATCCAGTGCAAAGTCTGCGGCAAGTGTTTCGGGACATCGACTCTGTTGAAGATGCATGAGAGGGGACATTCAGGGGAGCGCAACTTCTTCTGCGGCGTCTGTCAGAAGGCCTACATGCACGAGAGGACCTTGAGGCAGCATATGCGGGTTCATGGTCCCGTGTGGAAGTTCACATGTTCAGAGTGCGGGAATGGGTTCCAGAATAAGAATGATTACAACAAACATATGAAACAATGGCATCTTAGGACAATTGTGATGAATTTCGATGGAACAAAACCCAACGAAGTGAAGAAACGAGTAATCACCAGTCTCTGGGAGCTGACGATCTCCGAACGCACCAACGCTTCCAGGATTGTGCAGCTCACCACCGCCAAGCCCTTCTTCTACTGCCGCTACTTCTTCAAGTGCTTCTTCTGCCACGAACACTACTCCGACATAAAgaagctcctcgaccacacaaCGACGCACGAAGTACCCGACCAATCCAAAATCCTCAAAGAACTACTCAAGAAAGGGATGAGATCTCTCAAAGTCGACATCTCGGAGCTAAAATGTCGGATGTGCCAACGAGTGTTTGCAGAACTCGACGCAGTCAGGACTCATCTTGTCACAGATCACAACATATCTTTCACGGAGTCGGGCAATGGCGTCGTTGCTTATAATTTGGCGACTGAAAACGAACTGTTCCGCTGTCACGTCTGCAATAAGAAGTTCCAGACTTTTATTCTTCTAAACAGACATATGAACGTACACTTCAGCAATTCTGTCTGCGAAGTATGCGGGGCTGGTTTTATGTCGCATCAAAGGCTGATGCAGCATAAGGAGATCCACCAACCTGGCGGGTATCCTTGCAGCCGATGCAGCAAAGTCTACACGACGAATTCCAATCTGAAATTCCACATAGAAAAAGCCCACGAAGGCAACAGGAAGATGCGAATGCTTCGCTGTCCTCACTGTCCCGAAAGGTTCACGGAGCATTTCAGAAAGCTGAAACACTTGAAAGACGCTCACGGCATAACGTTTTCCTATGAATGTGATATTTGCAATTCCGTATTCCCTAGCAGAAGAGCACTGACCACGCATACCAATAGGCAGCATTCAGCTAAGACTCAGTGCGAAGTGTGCAAGAAATGCTTCAGCTGCATCACAGCTTTAAGAGTTCACATGATCTGCCATTCGGGAGAAAGGAACCACATGTGCGAGCTGTGTCAGAAGACTTACCGGCATAAGAAGAGTTTGAAGTACCACATGAGAACACATGCCAACGGTGACCAGCTGATCAAATTTACGTGCCCGGAGTGCAGCACTGGCTTTCCGAGTAGGAACGACTTTAACAAGCACGTTAAGGAGTGGCATCCGAGgagctattttaattatattatcaactAA
- Protein Sequence
- MTKSERQNVATFLEFTTVKPFYYQQANFKCFYCSEIFPEVHAVLRHTESHGMPNRSSLLKQYLRKGKRVIKVDISDLKCRICELKYSELDDIRKHLITTHKKEFNAAGNGLMAYNLSTTTGLLSCYKCAKEFNSFFVLNRHMNVHFNVVCETCGLGFMSHQRLTNHRIVHQNGAHKCERCHQVFPTKLKLRYHVIKRHEVANVKKLKPLKCPQCFERFSEHYKKMTHLKATHGISFTFECQTCKAVFPTRRALTEHTTKLHTQKIQCKVCGKCFGTSTLLKMHERGHSGERNFFCGVCQKAYMHERTLRQHMRVHGPVWKFTCSECGNGFQNKNDYNKHMKQWHLRTIVMNFDGTKPNEVKKRVITSLWELTISERTNASRIVQLTTAKPFFYCRYFFKCFFCHEHYSDIKKLLDHTTTHEVPDQSKILKELLKKGMRSLKVDISELKCRMCQRVFAELDAVRTHLVTDHNISFTESGNGVVAYNLATENELFRCHVCNKKFQTFILLNRHMNVHFSNSVCEVCGAGFMSHQRLMQHKEIHQPGGYPCSRCSKVYTTNSNLKFHIEKAHEGNRKMRMLRCPHCPERFTEHFRKLKHLKDAHGITFSYECDICNSVFPSRRALTTHTNRQHSAKTQCEVCKKCFSCITALRVHMICHSGERNHMCELCQKTYRHKKSLKYHMRTHANGDQLIKFTCPECSTGFPSRNDFNKHVKEWHPRSYFNYIIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390621;
- 90% Identity
- -
- 80% Identity
- -