Celi012522.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:16597640-16603561[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.4 2.6e+02 3.0 0.4 1 20 92 111 92 114 0.72 2 20 0.0012 0.089 13.9 0.2 2 23 142 164 141 164 0.96 3 20 0.00018 0.014 16.4 1.9 2 23 188 209 187 209 0.97 4 20 0.12 9.5 7.5 0.3 2 23 213 234 212 234 0.95 5 20 0.0017 0.13 13.4 4.3 1 23 239 262 239 262 0.94 6 20 0.77 60 5.0 3.4 2 23 274 296 273 296 0.94 7 20 0.00042 0.032 15.3 0.5 1 23 302 325 302 325 0.96 8 20 5.5e-05 0.0042 18.1 1.5 2 23 330 351 329 351 0.97 9 20 0.00032 0.025 15.6 1.5 1 23 357 379 357 379 0.95 10 20 0.00021 0.016 16.2 0.5 1 23 385 408 385 408 0.94 11 20 0.24 19 6.6 6.1 1 23 481 503 481 503 0.98 12 20 0.29 22 6.3 0.1 2 23 531 553 530 553 0.91 13 20 9.3e-05 0.0072 17.3 3.9 1 23 576 598 576 598 0.98 14 20 0.048 3.7 8.8 2.1 2 23 603 624 602 624 0.95 15 20 0.00028 0.022 15.8 0.8 1 23 629 652 629 652 0.97 16 20 1.2 97 4.3 3.4 2 22 662 682 661 684 0.78 17 20 0.00046 0.036 15.1 1.7 1 23 690 712 690 713 0.96 18 20 0.0057 0.44 11.7 4.0 2 23 718 739 717 739 0.97 19 20 9.7e-06 0.00075 20.4 6.3 1 23 745 767 745 767 0.99 20 20 0.001 0.08 14.1 0.3 1 23 776 799 776 799 0.96
Sequence Information
- Coding Sequence
- ATGATAACCAGCGAAACTTCTAGACAATTCCTTCCAGCCGAAGACCTAGCGACCGCTGGTTCTAATCAGTTTGTAGTTGAAAACGAACACGAGATTGTTAGCCGCGTTCATAGACATTTCAAAGGCAAAATTGTATCTTCCTCAGGAGCACGAGCAAGACAGCAGTCTGGGCCTCGGACGAGCATATGGCAAATGACGGCATCCGAGCGGCAGAATGCTGCTACCTTCCTCGAGTTCACGACCGTTAAACCCTTCTTTTACCAGCAAGCGAACTTCAAATGCTTCTATTGCAATGAGATTTATCCAGAAGTTCAATCAGCCCTATACCACACAGCGTCACACACAACCCCAAACAGATCCATTTTACTGAAGCAACACCTAAGGAAAGGCAAGAAAGTGATCAAGGTTGACCTGTCAGGACTGAAATGCAAGATCTGTGAACTGAAGTATTCTGACTTAGATGATATTAGAAAGCATTTGATAACAGTGCATAAGAAAGAGTTTAACGCCTCAGGGAACGGCTTAATGGCGTACAATCTTAGCTCGAGAAACGGGCTGCTGTCTTGCCATGTATGCGCTAAGGAATTTAACACTTTCTTCTTGTTAAATCGCCATATGAACGTGCACTTCAGCGTGGTCTGCGAAACTTGCGGTTTAGGATTCATGTCTCACCAACGATTAGTGAACCACAAGATTGTCCACCAGAACGGGACGCACAAATGCGACAAATGCCAGGAAGTCTTTAGTACGAAGGTTAAGCTACGTTACCACGTCTTTAAACGGCACGAAGTTACAAACGTGAAAAAGCTTAAACCTTTGAAATGTCCGCATTGTTTGGAGCGCTTCTCCGAGCATTACAGGAAGATGACCCACTTGAGAGAGGCTCACGGCATCAGCTTTACCTTCGAGTGTCCGAACTGCAAGACTGGTTTCCCGACAAGGAGAGCTCTAACGGAACACACGACAAAACTCCACACGCAGAAGATACAGTGCAAAGTTTGCGGCAAGTGTTTTGGGACTACGACCTTGCTGAAGATGCACGTGAGAGGTCACACGGGGGAGCGCAATTTCTTATGCGCTATCTGCCAAAAAGCGTACATGCATGAGAGGACTTTGAGGCAGCACATGCGTGTCCACGGTCCGGTGTGGAAGTTTCTGTGCCCGGAGTGTGGAAACGGGTTTCAGAATAAGAATGAGTACAACAAACATATGAAACAGTGGCATCCTGAGTGGAGCCATAAAGCGGCTGTTATAAATGGAGACGGCCAGCATTTGAAACACACTAAAGAACCTAACTTTTTCTCCCCAGGTTCAAAGTCCGAAGAAGTGAAGACACGCGAGATCACCAGCCTATGGGAGCTGACCATCTCTGAACGCACCAACGCCTCCAAGTTCGTGCAACTGACCACCGCCAAGCCGTTCGTCTACTGCCGATACTTCTTCAAATGCTTCTTCTGCCATGAACACTATTCCGACATCAAAAAACTCCTCGTACACACTTCAACGCACGAAGTACCTGATCAAACCAAATTCCTTAAAGATCTGCTCAAAAAAGGGAGAAGAACCCTCAAAGTTGACATCTCAGAGCTACAATGTCGGATGTGCCAGCGGGAGTTTGGAGAACTCGACGCGATCAGGAAACATCTCATAGCAGACCATAGCATATACTTCACTGAATCAGGCAATGGAGTTGTTGCATACAATTTGGCGACGGAAAACGAGCTCTTCCGTTGTCACGTCTGCAGTAAAAAGTTCCAAACATTCATTCTTCTTAACAGGCATATGAACGTTCACTTCAGCAACTCCGTTTGCGAGGTCTGCGGCGCTTGCTTTATGACGCATCAACGCCTTATGCAGCATAAAGAGATCCACCAGCCTGGAGGCTACCCTTGTGGCAGCTGTAGCAAGGTCTACACAACAAGTTCCAATCTAAAGTTTCATATCAAAAAGGCTCATGAAGGTAACAGAAAGATGCGACTGCTCCGGTGTCCTCATTGCCCGGAGCGGTTTTCAGAACACTTTCGGAAGCTCAAGCACTTCAAAGAGGTTCATGGAATAACGTTTACCTACGAATGCGATGTGTGCAAGTCAGTATTTCCCAGCAGACGGGCGTTGACAACGCATACGAATAAGCATCATTCTGAAAAGACTCAGTGCGAAGTCTGCAAGAAGTGCTTTAGCTGTGCTTCTGTTCTGAAAGTGCATATGCTTAGCCATACTGGCGAGAGGAACTACACCTGCGAAATGTGTCAGAAGTCTTACAGGCATAAGAAAAGCTTGAAGTATCACATGAGATCTCATGTGCGTGGAGATCAATTGATTAAGTTCACGTGTCCTGAATGCAGCAGCGGGTTTCCTAATAGGAATGACTTTAATAAGCACGTCAAAGAGTGGCATCCTAGCAATTATTTTGATTATGTTGTCAACTGA
- Protein Sequence
- MITSETSRQFLPAEDLATAGSNQFVVENEHEIVSRVHRHFKGKIVSSSGARARQQSGPRTSIWQMTASERQNAATFLEFTTVKPFFYQQANFKCFYCNEIYPEVQSALYHTASHTTPNRSILLKQHLRKGKKVIKVDLSGLKCKICELKYSDLDDIRKHLITVHKKEFNASGNGLMAYNLSSRNGLLSCHVCAKEFNTFFLLNRHMNVHFSVVCETCGLGFMSHQRLVNHKIVHQNGTHKCDKCQEVFSTKVKLRYHVFKRHEVTNVKKLKPLKCPHCLERFSEHYRKMTHLREAHGISFTFECPNCKTGFPTRRALTEHTTKLHTQKIQCKVCGKCFGTTTLLKMHVRGHTGERNFLCAICQKAYMHERTLRQHMRVHGPVWKFLCPECGNGFQNKNEYNKHMKQWHPEWSHKAAVINGDGQHLKHTKEPNFFSPGSKSEEVKTREITSLWELTISERTNASKFVQLTTAKPFVYCRYFFKCFFCHEHYSDIKKLLVHTSTHEVPDQTKFLKDLLKKGRRTLKVDISELQCRMCQREFGELDAIRKHLIADHSIYFTESGNGVVAYNLATENELFRCHVCSKKFQTFILLNRHMNVHFSNSVCEVCGACFMTHQRLMQHKEIHQPGGYPCGSCSKVYTTSSNLKFHIKKAHEGNRKMRLLRCPHCPERFSEHFRKLKHFKEVHGITFTYECDVCKSVFPSRRALTTHTNKHHSEKTQCEVCKKCFSCASVLKVHMLSHTGERNYTCEMCQKSYRHKKSLKYHMRSHVRGDQLIKFTCPECSSGFPNRNDFNKHVKEWHPSNYFDYVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172601;
- 90% Identity
- -
- 80% Identity
- -