Pchl008505.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_951640565.1
- Location
- OX621194.1:17528167-17538596[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.45 7.3e+03 -3.2 1.2 61 90 78 107 47 113 0.52 2 3 3.1e-75 5e-71 240.3 25.1 1 296 128 414 128 417 0.88 3 3 1 1.7e+04 -4.4 7.7 1 40 414 453 414 467 0.72
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCAGAAGTGGCTACGCCTGATAACAGCGACGAGGAGAGCGGAGATGCCTTCACCGATGGAGATTTCGGAGACTCCGACGATGAGACAGTTCTCGAACAAAATGACAGCAAATCTTTAAACATCCCCGTCAACGAGACTGTCAATAAGGAAGTAAAGAGCAACATTACCAACGGCAACTGTTCTCACAATGGACATGAGGCATCCCCTGCAGACGACTGCGAAGACCAATCGAAAGTGAAAGGACGTAAGAACAGTGAAAATCAAAGTGATGTGGACAATAATTACAGTTCGCAATCAGAAGTGAGACGGGACTCCCACGGCGATCAAAATCCTTCGATTGTCGGAATTCTCGGGGATCAGCACAATCATGCGGAGCAGCGgctcgcggcgcggcgcgcggcgcgtgcaGAGGCACGCGAGATACGCATGCGGGAGCTGGAGCGCCAGCAGCGGGAACAGGAGGACCATGCCGATAAAGCGTACGACATGTACGCAGGTTCGGTCAAAGAGAGCGTGGGGCGTCGCGGCAGTTCGCGGCTGGCCTCGCTCAGTCCCGCCACCAGTCTGGCGCACTCGCCCCGAAGATGTTCCGAGGACTCTGCGGACGACACGTTTAACATTAAGGACTTACGGCACGAACTGAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCACTGCACTACCAGCTCGAGCTGCTCAAAGACCGCATTCTAGAGCTGCAAGAGGAGCACGCGCAGCTGCAGCGGGAATACCGAGAGAAGTGCTCGTCCCACGAGCGTCTAAAACGCGAGAACGTGTCGCTGGAGCGCGAGCTGTGCGCGGCGCGGGACGCGGTGCGCGCGCGCGAcgcggcggccgcggccgcgGGGTTCGCGTTCGCGGAGGCCGCGCCCGGCGCCGCGCACGCAGAGGGCTTCGGTGCCGTGCCGCCGCTCGCGCTGCTCTCGCACGAGCAGGAGCAGGCGCTCAGCGAGCAGGGCGAGGGCACGCTGGACGTGCGATTGCAGAAGCTGGTGACCGCCAAACAGTCACTGGAGTCGGAGGTGCGGAAACTGAAGCTGACGTTGAACGAGGAGCGCGCGGCGCGGCAGAACGGCGTCTCCAGCCGACACGACCTCGACTACGAAAACGAACTGGAGAGCCTCCGCAAGTGCGTGTCGGAGGCGAaggggcgcgcggcgcgcgcggagGCGGAGGCGGCGCTGCAGGCGGCGGGCGTGGCGCGGCTGGAGGCGCAGCTGCAGCGCATGCGCGCGCGGCACGACCTGCGCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGTATGCACTCACACTGCATCTGTGCCGCCGGGGCCGCTTGTGCCGCCGGGGCCGCTTGTGCCGCCGGGGCCGCTTGTGCCGCCGGGGCCGCTTGTGCCGCCGGGGCCGCTTGTGCCGCCGGGGCCGCCGGAGCCGGTGGTGCCGCCGGGGCCGCTGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCACCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCGCCGGTGCCGCTAGTGCCACCGGTGCCGTCACCTGTATAA
- Protein Sequence
- MGHRSEVATPDNSDEESGDAFTDGDFGDSDDETVLEQNDSKSLNIPVNETVNKEVKSNITNGNCSHNGHEASPADDCEDQSKVKGRKNSENQSDVDNNYSSQSEVRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGSVKESVGRRGSSRLASLSPATSLAHSPRRCSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEHAQLQREYREKCSSHERLKRENVSLERELCAARDAVRARDAAAAAAGFAFAEAAPGAAHAEGFGAVPPLALLSHEQEQALSEQGEGTLDVRLQKLVTAKQSLESEVRKLKLTLNEERAARQNGVSSRHDLDYENELESLRKCVSEAKGRAARAEAEAALQAAGVARLEAQLQRMRARHDLRDEHEEQLKQERRKLQREVCTHTASVPPGPLVPPGPLVPPGPLVPPGPLVPPGPLVPPGPPEPVVPPGPLLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPLVPPVPSPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -