Pfla011952.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292433.1:325670-327070[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00039 4.6 7.8 0.2 21 49 178 206 173 209 0.90 2 6 1.3e-05 0.15 12.6 0.2 21 45 237 261 233 270 0.78 3 6 0.00026 3.1 8.4 0.0 25 46 297 318 284 323 0.85 4 6 0.12 1.4e+03 -0.1 0.0 27 53 327 353 322 354 0.78 5 6 0.15 1.7e+03 -0.4 0.1 17 30 345 358 337 372 0.67 6 6 0.022 2.6e+02 2.2 0.0 21 48 374 401 366 404 0.89
Sequence Information
- Coding Sequence
- ATGGATTACAAATTGTGCCGGCTATGTTACGAGAGAGAGGCAAATTCAAGCATTTTCGAAAGCGGCGGAAATGAAGACCAAACCTATAGCAAAATATTGTACTGTTGTAAATCTGTGAGTGTTCAAGAGAACGATGGGCTGCCGTCTTATATCTGTACTATCTGCGATTGCGACCTCGAAGTATGTTACAAGTTCCTGCAGCAGGTGGAGGCTTCAGACCAGAAACTGCGCTCCTTGCTTAACGGAACACTAGCCAGTCAAACCAATCAGATAGATCACATTCTGAAAAAAGAGGTCAAGTGTGAAGAAATTGATGATGACACCCAGCACGCAGATGATTTCCAGTCACCCCAGTCGAAGGACGATGCACGGAAGCTAAGTAAACACATAGAATCCACGAAAGAAAAGGTAGTCGTCAAGAAAAGGCTCAGAAAaagagtaaaatacaaaaaaggaaATCATAATTGTTCAGTGTGCAGTCAAACTTGTGCAAGTGCATCTTCACTTGTCATACACATGCGCAAGCACACTAATGAAAAGCCTTTCCACTGTTCTTCCTGcgacaaaaaatacaaagacaGCGGGACATTGAAACGACATATAGAAAGGAATCACATGCAGCATCGAGAAAGGAGGTTCATTTGTGAGAATTGTGGAAAAGGGTTTTACTCCAAAAACGATATAATGATTCACATGAGGGTACACACAGGTGAGACTCCGTATACATGTCCTATTTGTCTTGCAAGATTCACACAGCTGAGTGCTATGTTCAGACACAAGAGACGTCACACAGATGCAAAGTCACATGTCTGTGCCACATGCGGCAAGTCCTTCTGGACCAGGGAAGAGCTAAAGAAACATCAGAGTGTTCACAACGATGCTAGAAACTTTAAATGTCCAATCTGCAATGTGCAGTTCAAGCAGAAGAGTAGTATCAAGAAGCACCTGGACATCCATGCCGACCCTAACAGCTATGTGTGCAACCACTGCGGACAAACATTCAATTTAAAGGGAAACTTAAAATCACATATGAATAGAAAGCACTCCGAGAAGTCAGGGTACTGTGAACTCTGCCACAAAAATGTGTCTAACATTGAGATACACATATGGCGGCATACAGGACAGAGGCCCTTGAAATGTGAATTCTGTCCGAGTAGCTTCTTTGACATGAAAGCATTAGCTCGTCATGTAAACTTCAAGCATAAGATGACTGACAAGTTCAAGTGTACTGCGCCCGGCTGCCCGCTGGCCTTTCCTTCCCGGCCGATGTTGATGTACCATGTTGCCAGATTCCATGACATGCAGTTTCTACACCCTTGCGACAGGTGCCCCAGGGGGTTTTACAGGAAGAATGATCTTGCAAGGCATAAAATTGGCACTCATCAAGAAATACTACTATAG
- Protein Sequence
- MDYKLCRLCYEREANSSIFESGGNEDQTYSKILYCCKSVSVQENDGLPSYICTICDCDLEVCYKFLQQVEASDQKLRSLLNGTLASQTNQIDHILKKEVKCEEIDDDTQHADDFQSPQSKDDARKLSKHIESTKEKVVVKKRLRKRVKYKKGNHNCSVCSQTCASASSLVIHMRKHTNEKPFHCSSCDKKYKDSGTLKRHIERNHMQHRERRFICENCGKGFYSKNDIMIHMRVHTGETPYTCPICLARFTQLSAMFRHKRRHTDAKSHVCATCGKSFWTREELKKHQSVHNDARNFKCPICNVQFKQKSSIKKHLDIHADPNSYVCNHCGQTFNLKGNLKSHMNRKHSEKSGYCELCHKNVSNIEIHIWRHTGQRPLKCEFCPSSFFDMKALARHVNFKHKMTDKFKCTAPGCPLAFPSRPMLMYHVARFHDMQFLHPCDRCPRGFYRKNDLARHKIGTHQEILL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170826;
- 90% Identity
- iTF_01170826;
- 80% Identity
- iTF_01171701;