Pfla006541.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292425.1:14407993-14415612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.049 3 8.9 1.0 2 22 492 512 491 515 0.89 2 11 0.0014 0.084 13.7 3.3 1 23 529 552 529 552 0.97 3 11 0.066 4 8.4 2.7 3 23 559 581 557 581 0.90 4 11 0.025 1.5 9.8 0.0 2 21 632 651 631 652 0.95 5 11 9.5e-05 0.0058 17.4 0.7 1 23 709 730 709 730 0.97 6 11 0.00034 0.021 15.6 0.9 1 23 736 759 736 759 0.96 7 11 0.69 42 5.2 1.9 2 19 778 795 777 797 0.94 8 11 1.5 92 4.2 0.1 2 23 808 831 808 831 0.92 9 11 0.016 0.95 10.4 5.4 1 21 839 859 839 861 0.94 10 11 0.013 0.78 10.7 0.5 1 21 867 887 867 892 0.92 11 11 0.086 5.3 8.1 1.3 1 23 898 921 898 921 0.94
Sequence Information
- Coding Sequence
- ATGCTGTCTCCACGAGAGGACGATGACGATGACACGCACCTCTGCATCAAATGCAATAGCACCATCGTCGGCCTGGACACCTACGTCAAACACAGGAAGGAACGATGCGGCAAGAAGTCTGAGAGCAAAGACCTACCTCCTATTGACACTTTAGACCCTACCTACAGCTTAGGAGCTGATGTGTTCTTCCAATCTTTGGAACTCCAGAGCAGTGTCAAGAAGACTGCACTATCCAGATTGACACCACCGATTTCGATCTCAAAACCAATTATTATAGACAGGAAAAGTTCCTTAGCTATCGCATCAACTTCAAGAGCTCAAATGAGCCCTCTCGAAACCAACCTTAGAGGAGAAGACTGGATTGGAGGACATACGATAAGAATAAGTGGTAATGAAGAAGACAACCAAACAAAGCTTATTAATGCTGTAGCTAGCATAAGTGGAGCAGTCAAAAAAGAAACCAATACCTCTTACACGATAGGATATAATGACTACAAAGGTGACGAGGAAAGTGACGAATCAGAAGTATTTGAAGAAGATGACGATGAAGAACAAACTGGTGGAAAATGGAAACCTCCTGTAAACTATACTGGAGGTAAGTGGCGACCAGCGTCACCTGAACACGACTGGGATGATCAAGAACCTTCTGCAACTTGGAAAACTCTACTACCAGAGGTTGATCGTGATGAGGACTATGATGCTCCACCACCAGGGCATACGAAAGGTAAATGGGTACCTGGTGCGAACGAGAAAACTCAAATAATGCAGACAACAATACAGACGAAAGGGTCCGTCCAGTACTGGTGTGGCCCATGCAACAGAAGATTAGGCTCTCGAGCTATTTACGACAGGCATCTGAGATCCAGTCTTCATCTGAAAAAGGTGCTTCCAGAACATGAGCTGGAGTTCTCTGGGCATTTACAGCCAATGAAGGGAGTAGAAAAACGCATAGGAAGACCTTCAAAATTTGTAAATGATGGAATTTATTCTCAATTGGAAAGGAAAAAGAGGCAGAAGGGTCATAAAATGAATGTCAAAATTgaggtaaaaaaaagaaaacgaaaGTCATATTTTATCCACTGCGCTGGTTGCAAGTCTCGTGTCAGAGAACATTTGATGGGCAAGCATCTGATCTCTCACTATCACTTCAGAAAAGCAGCTGGAGTGACTGACTCTTTATACCAGCAGCTGATTTTGGACAACATAGACGCTATCGTCCATCAGTCGCCTTTCCAATGCAGTCCTTGCAAATTCTACACTAACTGGCTTTCCACCTTCATGCAACATTGGTATTCCGAAGAACATGAGTGGGCCATGACCTTCATTGAAGGGATCTACTGGTGTTCCTTCTGTAAGTTCGAATGCAAGAGTTCCCAAGAAATGCTAGAGCATTTATCTGGATCTGATCATAGCGAAGTAGTTGCAGTCATCAATAGATCGATGCCCATCATCATTCGAAAGAAAACTGTTCTTAAATGTGAAACTTGTTCCAGTGTATTTAGGTTCAACATTGAACTGAAGAAACACAGTCAGAGGAGTGGCCACCAATTGGCGTATACAGCAACAGATACCTACCAAGAGTTGCACCAATGCCAGCAATGCAATACCAAGTTCAAATCATCACTCACTTTAGCGGCTCATTTGAAATCTAAACACAAACAAAAGCCACATTTATGTCTTGTCTGTTCTAAGACCTTTGAATCTTCAGAAGAAGCTAAGCACCATCGCCAGACTTCGGAACACAGGGTCAACCGTAAGGAACTGCTGATTAAGCAAGGGGTTATCACGAAGGACTTGAGGAAGAAGTGTCCGTATTGTCCGGGAGATGTTATGATAAAGAATATTCTGGTGCTGAAGGAACACATTCGGTCTTTTCATCCGGATATCAGGAAAACGTGCCCAAAATGTGGCATGGAGTTCATACTCTCCCAAGAAGTGACCAGCCACATCCGCGCTAACGCATGCCAATTCCAAAACTCTGCTCGCGTTAACTCTTCAGTCTTCTGGAACTGCAGCCAATGTCTCTTCATAACCGACTCTCAAGCCGAGTGCTACTTCCACGAGGTCTTGCACGACCCACCTGAAAAAGTCACGAAGGATGGTTCAGAAAAAGTTgccgaaaaatatatttgtccaATATGCCAGAAGGGTTTCAAGAAGGCGTCCCTTCGCCAGCATTTACGTCAGCATACTTTCGAAAGACCCTTCGTTTGTACGATCTGTAGAGCGAACTTCACACGGCAGACCAGTTTGTCGAACCATGTGAAGTATGAACATGGGGATGCTGTGAAGATGTCCAAAGTGTTGTCGGCTGTGGAGAGGGACGAGTGGAGATGCGATAAATGTATGAAGAGGTTTCCGAAcaaAACGGTGCTCTCCCGCCATTCCTGCTGCTCCCGAGTCCTGAGCAGCGCCGACCGCAAGTGTAGCGTTGAAGACTGCACCTTCATCGCCGTCAGCGCCCTGCAATTGgccaaACATCAACGAGCTCACGGCATTACCAATGCAGAGCGCCACAAGTGTCCACAATGTCCGTTCAAGAGCGCCCAGGCCAGTCATCTGAAGAGGCACCTCCAATGCCACAAAGGCGATAAGCCGTATGCCTGTCCACACTGTGAATTTACTAGCGGGAGTTTGGAAAATCTTCGTAAACATGTGCTTCGTAGCGGTCGACACAAAAATGTGTTTCTTTATCTATGCAAGCATTGTGAGTTCAAAACGAACATGGCCACGGATCTACGAGCACATCTTACTTCAGCACATTCGGCAGAATACAACTCGCAAACCGCTGTCCAAGCAGCTAAAGTGCATTTGATGAAGATTTTATAA
- Protein Sequence
- MLSPREDDDDDTHLCIKCNSTIVGLDTYVKHRKERCGKKSESKDLPPIDTLDPTYSLGADVFFQSLELQSSVKKTALSRLTPPISISKPIIIDRKSSLAIASTSRAQMSPLETNLRGEDWIGGHTIRISGNEEDNQTKLINAVASISGAVKKETNTSYTIGYNDYKGDEESDESEVFEEDDDEEQTGGKWKPPVNYTGGKWRPASPEHDWDDQEPSATWKTLLPEVDRDEDYDAPPPGHTKGKWVPGANEKTQIMQTTIQTKGSVQYWCGPCNRRLGSRAIYDRHLRSSLHLKKVLPEHELEFSGHLQPMKGVEKRIGRPSKFVNDGIYSQLERKKRQKGHKMNVKIEVKKRKRKSYFIHCAGCKSRVREHLMGKHLISHYHFRKAAGVTDSLYQQLILDNIDAIVHQSPFQCSPCKFYTNWLSTFMQHWYSEEHEWAMTFIEGIYWCSFCKFECKSSQEMLEHLSGSDHSEVVAVINRSMPIIIRKKTVLKCETCSSVFRFNIELKKHSQRSGHQLAYTATDTYQELHQCQQCNTKFKSSLTLAAHLKSKHKQKPHLCLVCSKTFESSEEAKHHRQTSEHRVNRKELLIKQGVITKDLRKKCPYCPGDVMIKNILVLKEHIRSFHPDIRKTCPKCGMEFILSQEVTSHIRANACQFQNSARVNSSVFWNCSQCLFITDSQAECYFHEVLHDPPEKVTKDGSEKVAEKYICPICQKGFKKASLRQHLRQHTFERPFVCTICRANFTRQTSLSNHVKYEHGDAVKMSKVLSAVERDEWRCDKCMKRFPNKTVLSRHSCCSRVLSSADRKCSVEDCTFIAVSALQLAKHQRAHGITNAERHKCPQCPFKSAQASHLKRHLQCHKGDKPYACPHCEFTSGSLENLRKHVLRSGRHKNVFLYLCKHCEFKTNMATDLRAHLTSAHSAEYNSQTAVQAAKVHLMKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686811;
- 90% Identity
- iTF_01171043;
- 80% Identity
- -