Paff010406.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560193.1:14104943-14113096[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.18 12 7.1 0.8 2 22 491 511 490 514 0.89 2 11 0.0014 0.089 13.8 3.3 1 23 528 551 528 551 0.97 3 11 0.033 2.1 9.4 1.3 3 23 558 580 556 580 0.90 4 11 0.017 1.1 10.3 0.1 2 21 631 650 630 651 0.95 5 11 6.9e-05 0.0045 17.8 1.0 1 23 708 729 708 729 0.98 6 11 0.00029 0.019 15.9 0.8 1 23 735 758 735 758 0.96 7 11 0.22 14 6.8 2.7 2 23 777 799 776 799 0.93 8 11 0.013 0.84 10.7 0.5 1 23 799 823 799 823 0.97 9 11 0.01 0.65 11.0 6.3 1 21 831 851 831 853 0.94 10 11 0.013 0.82 10.7 0.5 1 21 859 879 859 884 0.92 11 11 0.086 5.6 8.1 1.3 1 23 890 913 890 913 0.94
Sequence Information
- Coding Sequence
- ATGCTGTCTCCGCGAGAGGACGATGACGATGACACACACCTCTGCATCAAATGCAATAGTACCATCGTCGGCCTGGACACCTACGTCAAACACAGGAAGGAACGATGCGGCAAGAAGTCTGAGAGTAAAGACCTACCTTCTATCGACACTTTAGACCCTACCTACAGCTTAGGAGCTGATGTGTTCTTCCAATCTTTGGAACTGCAGAGCAGTATCAAGAAGACTGCACTATCCAGATTGACACCACCTATTTCGATCTCAAAACcaattatagatagaaaaagttCTTTAGTTATCGCACCAACTTCAAGAACTCAAATGAGCCCTCTCGAAACAAACCTTAGAGGAGAAGACTGGATTGGAGGACATACGATAAGAATTAGTGGCAACGAAGAAGACAACCAAACAAAGCTTATTAATGCTGTAGCTAGCATAAGTGGAGCAGTCAAAAAAGAAACTAATACCTCTTACACGATAGGTTACAATGACTACAAAGGTGACGAAGAAAGTGACGAATCTGAAGTTTTTGAAGAAGATGACGATGAAGAACAAACTGGTGGAAAATGGAAACCTCCTGTAAATTATACTGGAGGCAAGTGGCGACCAGCGTCTCCCGAACACGACTGGGATGATCAAGAACCTTCTGCAACCTGGAAAACTCTACTACCGGAGGTAGATCGTGATGAGGACTATGATGCTCCACCACCAGGACATACGAAAGGAAAATGGATACCTGGTGCGAACGAGAAAACTCAAATAATGCAGACAACTATACAGACAAAAGGGTCCGTCCAGTACTGGTGTGGACCATGCAACAGAAGATTAGGCTCTCGAGCTATTTACGACAGGCATCTGAGATCCAGTCTTCATCTGAAAAAGGTGCTTCCAGAACATGAGCTGGAGTTCTCTGGCCATTTACAGCCTATGAAGGTAGTAGAAAAACGCAAAAGAAAACCTTCGAAATTTGTTAATGATGGAATTTTTTCACAATTAGAAAGGAAAAAGAGGCAGAAAGATCATAAATTGAGTGTCAAAATTGaggtaaaaaaaagaaagcGAAAGTCGTATTTCATCCATTGCGCTGGTTGCAAATCTCGTGTCCGAGAACATTTGATGGGCAAGCATCTGATCTCTCACTATCACTTCAGAAAAGCATCTGGAGTGACTGACTCTTTATACCAGCAGCTGATTTTGGACAACATAGACGCTATTGTCCATCAGTCGCCTTTCCAATGCAGTCCTTGCAAATTCTACACCAACTGGCTTTCCACCTTCATGCAACATTGGTGTTCCGAAGAACATGAATGGGCCATGACCTTCATTGAAGGGGTCTACTGGTGTTCCTTCTGCAAGTTCGAATGCAAGAGTTCCCAAGAAATGCTAGAGCATTTATCTGGATCTGATCATAGCGAGGTTGTTGCAGTCATCAATAGATCTATGCCCATCATCATCCGAAAGAAAACTGTTCTTAAATGTGAAACTTGTTCCGATGTATTTAGGTTCAACATCGAACTGAAGAAACACAGTCAGAGGAGTGGCCACTCATTAGCGTATACAGCAACAGATACATACCAAGAGTTGCACCAATGCCAGCAATGCAATACCAAGTTCAAGTCATCACTCACTTTAGCGGCTCATTTGAAATCTaaacacaaagaaaaaaaacatttatgcctTGTCTGTTCTAAGACCTTTGAATCTTCAGAAGAAGCTAAGCAGCATCGCCAGACTTCAGAACACAGAGTCAACCGTAAGGAACTGCTGATAAAGCAAGGGGTGATCACGAAGGACTTGAGGAAGAAGTGTCCGTATTGTCCGGGAGACGTCATGATAAAGAATATTCTGGTGCTGAAGGAACATATTCGGTCTTTTCATCCCGATATCAagaaaaaGTGTCCTAAATGTGGCATGGAGTTCATACTCTCCCAAGAAGTGACCAGCCACATCCGCGCTAACGCATGTCAATTCGAAAACTCTGCTAGCGTTAACTCTTCAGTCTTCTGGAGCTGCACCAAATGCCTCTTCTTAACCGACTCTCAAGCCGAGTGCTACTTTCACGAGGTCTTGCACGACCCACCTAAAAAAGTCACGAAAGATGGTTCAGAAAAAATTGTGGTAAAATACGTTTGTCCATTTTGCGACAAGCTTTTCAGGAAGGCGTCCCTTCGCCAGCATATACGTCAGCATACTTTCGAAAGACCCTTCGTTTGTACGATCTGTAGAGCGAACTTCACACGGCAGACTAGTTTGTCGAACCACGTGAAGAATGAACATGGGGATGCTGTGAAGATGTCCAAAGTGTTATCAGCTGTGGAGAGGGACGAGTGGAGATGCGATAAGTGTATGAAGAGGTTTCCGAAcaaAACGGTGCTCTCCCGCCATTCCTGTGTGGACCACAAGTGTGACGTTAAAGACTGCACCTTCACCGTCGTCAGCGCCCTGCAATTGGCCaaACATCAACGATCACACTTCCTTCCCAAAGCAGAGAGCCACAAGTGCCCACAATGCCCGTTCAAGAGCTCCCAGGCCAGTCATCTGAAGAGGCACCTCCAATGCCACAAAGGCGATAAGCCGTATGCCTGTCCACACTGTGAATTTACCAGCGGGAGTTTGGAAAACCTCCGTAAGCACGTGCTTCGTAGCGGTCGACACAAAAATGTGTTTCTTTATCTATGCAAGCATTGTGAGTTCAAAACGAACATGGCCACGGATCTACGAGCACATCTGACTTCAGCACATTCGGCTGAATACAACTCGCAAACTGCTGTTCAAGCTGCTAAAGTGCATCTGATGAAGATTTTATAA
- Protein Sequence
- MLSPREDDDDDTHLCIKCNSTIVGLDTYVKHRKERCGKKSESKDLPSIDTLDPTYSLGADVFFQSLELQSSIKKTALSRLTPPISISKPIIDRKSSLVIAPTSRTQMSPLETNLRGEDWIGGHTIRISGNEEDNQTKLINAVASISGAVKKETNTSYTIGYNDYKGDEESDESEVFEEDDDEEQTGGKWKPPVNYTGGKWRPASPEHDWDDQEPSATWKTLLPEVDRDEDYDAPPPGHTKGKWIPGANEKTQIMQTTIQTKGSVQYWCGPCNRRLGSRAIYDRHLRSSLHLKKVLPEHELEFSGHLQPMKVVEKRKRKPSKFVNDGIFSQLERKKRQKDHKLSVKIEVKKRKRKSYFIHCAGCKSRVREHLMGKHLISHYHFRKASGVTDSLYQQLILDNIDAIVHQSPFQCSPCKFYTNWLSTFMQHWCSEEHEWAMTFIEGVYWCSFCKFECKSSQEMLEHLSGSDHSEVVAVINRSMPIIIRKKTVLKCETCSDVFRFNIELKKHSQRSGHSLAYTATDTYQELHQCQQCNTKFKSSLTLAAHLKSKHKEKKHLCLVCSKTFESSEEAKQHRQTSEHRVNRKELLIKQGVITKDLRKKCPYCPGDVMIKNILVLKEHIRSFHPDIKKKCPKCGMEFILSQEVTSHIRANACQFENSASVNSSVFWSCTKCLFLTDSQAECYFHEVLHDPPKKVTKDGSEKIVVKYVCPFCDKLFRKASLRQHIRQHTFERPFVCTICRANFTRQTSLSNHVKNEHGDAVKMSKVLSAVERDEWRCDKCMKRFPNKTVLSRHSCVDHKCDVKDCTFTVVSALQLAKHQRSHFLPKAESHKCPQCPFKSSQASHLKRHLQCHKGDKPYACPHCEFTSGSLENLRKHVLRSGRHKNVFLYLCKHCEFKTNMATDLRAHLTSAHSAEYNSQTAVQAAKVHLMKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686811;
- 90% Identity
- iTF_01171918;
- 80% Identity
- -