Pfla020797.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292448.1:2502017-2526864[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.5 4e+02 2.2 0.1 1 7 218 224 218 240 0.82 2 13 1.1 66 4.6 1.5 1 19 294 312 294 315 0.92 3 13 1.3 77 4.4 0.0 2 23 331 353 331 353 0.94 4 13 0.67 41 5.3 0.5 3 23 392 413 390 413 0.95 5 13 1.7 1e+02 4.0 0.7 1 19 737 754 737 757 0.80 6 13 0.26 16 6.6 1.7 1 23 769 791 769 791 0.91 7 13 0.02 1.2 10.1 0.3 2 23 797 818 796 818 0.97 8 13 0.0014 0.088 13.7 0.3 2 23 919 940 918 940 0.94 9 13 8.9e-07 5.4e-05 23.8 3.3 1 23 983 1005 983 1005 0.99 10 13 0.00025 0.015 16.1 0.8 2 23 1011 1032 1010 1032 0.95 11 13 0.00023 0.014 16.2 2.2 2 23 1039 1061 1038 1061 0.91 12 13 0.59 36 5.5 0.2 1 19 1066 1084 1066 1085 0.90 13 13 0.0096 0.59 11.1 0.2 3 23 1098 1119 1097 1119 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAGGAAGAAAAAGAAGCAGAAAATCGAAATTAGTAGTTCGCGACGACTATGACTCTGGTTACGAGGTCGTGAATGAGAATGACGCGACCACATTTTTGCAGAAACAACCCAAAATCGAGTCTGTAATAGAGTACCCTAGAGTCATATACACTGAACACCCGTCTCTGCTCGACCATGATTATTGCAAGCCTGGCTCACATGCCTTCGCTTCACCCTACAACCCACTTTCAGATACCTTCCAGGGTACTTCCttgaaattaatgaaaacttcCTCTGACTCTCTCTGTAAAGTTGAAGAGTGTGACAACATAGAGAAGGCATTAATACCTCCAAAGAGAAAATATTCTATACTAAGGAAAATGGAATCAGCGGTAAACCAAGCAGGAACCAGCCTAAAACCAAAACCAGCAATATGGATGTGCAAATACCAGCCGGACATTATTTTCCGTGTTTCGGAGAGTATCGCTGCATGCTCCAATAACCCAGCCGATAAGATCTTGGATATAGAAATGAGGAACTTATGGGGGGGCATTCGCAACCCTCCAGATAAGGCTAAACCCCATGATATTGTTTTACAAAAGGCCATAGAATCATGGCAGGTTTGGTACTTAAGTGCAAAGCTCATACGAGATGTGCCACTGTTGTACCAATGCCATATCTGCAATGTTGCCTGGTGGAGACTGCAGCCGTTCCGGGAACACCTACTAATCCACGACATCTCAACCTTGATGGTGGCGCTAAAGGAAAGCGTCCACGAATGCTTGATCGTTGCGAGTGATCAACCTGTTGACAATTTAACCTTCATTGATATCGACGAAGACTGTTGGCGATGCGGCAAAGATGTGGATTTCCACAAAGTGAACACTCAAGTGTACACGTGCCATCGATGCGACAAATACATGTACACATGTTCAGCTCTTGCGGAGCATGAAACTATCTGCTTATATGGGAACATGTCTAACATAAACGTAGCGGAAGAAAGGCGCTGTGTCATTTGCAAACTAGTCATCAGTTCCTTGAATCTGGTGGAAAAACATATGATAGAAGCACACTCCGTCCGCTCTGATTTACCTATACCTGTTATGTATAAAAATTGTATACATTGCAAAAGTAAATATTTCACATTCAACACTCACAGCTGTATAAAAAGTACTAAGAACACAGCTTGTGAGTATTGTTGCAGGAAATTTGCTACTAAACCACTTGCGTCAGCTCATATGCTCTCGCCCCACAACAAGCCTATCATATGCAGGATATGTTCGGAGCAGATTAGATCGAAATGCCTGGAAATGGAGCATATGGTCTACGAGCATTCGAATAATTACCAGCTGGCATACAAGTGCACGATATGCTTGAAGCAGAATATACTGTTCATGGATGAAATATCCATCAAAAGGCATAGGCAAATGTGGCATCAGAAGAAATTTGATAAGCGCAGATCTTATTATGAAATGatgCTAGTACCAAAGAGTTGTTTGCAAGAAATCAGCGACCAAGAAGCATTCGAGAATGATATTCAAATTTACTATACTCAAAGCCGGCCCGAGCCTCCAAACCACAATATACTTGTATCACCAGGGCACAAATTAATTTCATCACAAAACCTCGGGATCCTCTCAGCTGAGGTTGACGTGACTGTCGACAAAGTTGATGTTAAAAGAGAACCTGTAGAGTATAATGAGAATGATGAAGTGGATTACGAAGAAATGCTCAACAATATGTTTAATACAacggataaattaaaaaacaaagacaTCGCTAAAACTAATCCCACAGAGGAGGATTTCAGTAATGTTACAGTCAAAACGGAACCAATTGATGATATTGATATAACTGAAAACTCTGTTGAAAATATCCAAATCAAAACTGAACCTATAGACGAGAATGACATGAAGAATGAGTGTGCGGCAATACAATGTCAAATCCACGAGAATCCAGAGAAGGAGACGTTCATCGTCAAAGTAGAACGAGACGTCTACATGGATGACCCAAACACTGATATGATTGTGGTCAAAAATGAAATCCATGACGTAGATGATAAAAGTACATCCAACGAATCGATTCCTTTTGATAAACTTATAACAGATCTGGACATGTTCAAGACAAGTAAGAGGGACATGGTGTCCGAGGAGGTATTAAACCCGGACGAGATGTCATTCGACGTTATGACTCCTAGCGGGGTTTACAAGAAGAATAAGGTCTACGCTTGTTCCAAATGCGGCTACACAGCTAGGCACAAGCAATACAAAATACATGTGTCGTCCAACTGTGCCGTCTCTCCGGGGATCCATGCCAGTCATCCTTGCAGTAAATGTGGCCTGACCTTTGTCATGTTTAGGAATTATGTGTTACATTTCGACAATCACGGCTATGAGCACATGTCGTGCCCGAAGTGCGGTGACTCTTTCAACACACTTGTCAGATTGTTGTCGCACGTGCAGAAGCATATCAAGAATAACTTTGTCGGACTGCATGTTCTGGGGAAAGGAGGCGAGGAATCATCGCGAGCTAAGAAGAAGGTTAAATGTCAAGAGTGCCAGAGCGTAGTGCCGCAGGAGGACACTTTCACTCATTGGGAGACGCACCTCATGCTCGATAACAAGGCAGAGAAGCCGATACAGGTGAAGGAAGAGCCTCCTGAATTGACGGTGGACTGTGAAAGAGTCACTATGAACAATAAGCAGTTGGAACCGGCGGCGCTTAAGGCAGCTATAGAGCATCTCCAGTCGACGTCTTCCATTGAGAAGGAATGTGTGATATGTTATCGCGCGTTTTCGAGGCGGTATGACGTGAAGCGGCATATCGTGGAGCATTTACTCATGGACGCACATATGAAGAAAGCTAAATACAGAGCGTTCCGGTGTCAGATATGTCACGCTTGCTTCTTGCATCAGGAGAAATACAAGTTCCATATGCGAGACCACGGGTGCATGCCGATATTCAAGTGTGAACTCTGTAACAAGACGTTCAgTGACTCCAGCAACTTCGCTAAACACAAGAAGACGCATAACGTGCGAGTGCTGATCTGCGATCTGTGCAATAAGAAGTTTCACTCGAAAGCGGCGCTGGAGAAGCACATTTTGgAACATGACAGTTTGCCGAAGAAAAAGTGTGCGGACTGCGACAAAGTGTTCTCGACAAAGCAAAGCTATAAGAAACACAAATATCAAATACATCACAAAGCCAAGTTCAAATGTGTGCTCTGCGACCTAGCCTTCAGTAGTCTGCAGCAGAAATGGAACCACAACTGGGAGGTGCACAAGGAGAGGAAGCAAGCCGCTGACTGTCCCATCTGCCTGAAATCCTTCCGCAAGTTCCAGGATGTGCGCGTACACGCGCGTGTGGAGCACAGGGCGGAGGTCGCCGTCATCAAGCAAGACTCCGCGCGGAAAAACAACATACAGTTCTTTAAAGTGAAGGGTCTTGTAGTGAAAGATGAGGATAATGtGATATCAAcgaaaaattatgtattttggcCCAACGCTACCGTGCCTTTTTACGTGAATCCCGAACATTTCGaccATGAACAATCCTTATCCCTTCTGACTGCTCTCTCAATCTTCGCGTTCAAGACTTGCTTGAAGTTTGCACCCGTGATGGCAGCCCCAGCTTCCAACGAGCATGTCCTGGTGTTGGAAAACGCCAACGGTGTGAGGAGATGTGTGCTTGACACGCTTGGTCACTCGGTTTATGAGCCACATCGTGTTACTATCGGCTATGATTGCATTCAAAGCCCTCAGATCGAGATGATGATAATGCGAACGCTAGGATTTCCGTTCGAACATAATCGGATTAACCGCGGGATTTACATCGACGTGCTGGAAGAGAATATTGCGCCTGGAAAAAACACTatactaaaactaaaagctaatagGGTTGGTGGATCGGTGTCGCAGGCAACAATGCCTGGTGTATGTGCAATCAACCCTAGAAGCAATCATTGTGGGGACGGTGTTGGTGGTCCCCCGCAGCCTGCGCACCATGGAGGCGGCGCGCTTGCGCTGAGTGGCATTAAAGCAGTCGATCCGCGCCGCCGCAAACATACCAAAAGCGCTGCAGTAGCGGGGCAACCCCATCATTTCTCCGTGGTATGA
- Protein Sequence
- MSEGRKRSRKSKLVVRDDYDSGYEVVNENDATTFLQKQPKIESVIEYPRVIYTEHPSLLDHDYCKPGSHAFASPYNPLSDTFQGTSLKLMKTSSDSLCKVEECDNIEKALIPPKRKYSILRKMESAVNQAGTSLKPKPAIWMCKYQPDIIFRVSESIAACSNNPADKILDIEMRNLWGGIRNPPDKAKPHDIVLQKAIESWQVWYLSAKLIRDVPLLYQCHICNVAWWRLQPFREHLLIHDISTLMVALKESVHECLIVASDQPVDNLTFIDIDEDCWRCGKDVDFHKVNTQVYTCHRCDKYMYTCSALAEHETICLYGNMSNINVAEERRCVICKLVISSLNLVEKHMIEAHSVRSDLPIPVMYKNCIHCKSKYFTFNTHSCIKSTKNTACEYCCRKFATKPLASAHMLSPHNKPIICRICSEQIRSKCLEMEHMVYEHSNNYQLAYKCTICLKQNILFMDEISIKRHRQMWHQKKFDKRRSYYEMMLVPKSCLQEISDQEAFENDIQIYYTQSRPEPPNHNILVSPGHKLISSQNLGILSAEVDVTVDKVDVKREPVEYNENDEVDYEEMLNNMFNTTDKLKNKDIAKTNPTEEDFSNVTVKTEPIDDIDITENSVENIQIKTEPIDENDMKNECAAIQCQIHENPEKETFIVKVERDVYMDDPNTDMIVVKNEIHDVDDKSTSNESIPFDKLITDLDMFKTSKRDMVSEEVLNPDEMSFDVMTPSGVYKKNKVYACSKCGYTARHKQYKIHVSSNCAVSPGIHASHPCSKCGLTFVMFRNYVLHFDNHGYEHMSCPKCGDSFNTLVRLLSHVQKHIKNNFVGLHVLGKGGEESSRAKKKVKCQECQSVVPQEDTFTHWETHLMLDNKAEKPIQVKEEPPELTVDCERVTMNNKQLEPAALKAAIEHLQSTSSIEKECVICYRAFSRRYDVKRHIVEHLLMDAHMKKAKYRAFRCQICHACFLHQEKYKFHMRDHGCMPIFKCELCNKTFSDSSNFAKHKKTHNVRVLICDLCNKKFHSKAALEKHILEHDSLPKKKCADCDKVFSTKQSYKKHKYQIHHKAKFKCVLCDLAFSSLQQKWNHNWEVHKERKQAADCPICLKSFRKFQDVRVHARVEHRAEVAVIKQDSARKNNIQFFKVKGLVVKDEDNVISTKNYVFWPNATVPFYVNPEHFDHEQSLSLLTALSIFAFKTCLKFAPVMAAPASNEHVLVLENANGVRRCVLDTLGHSVYEPHRVTIGYDCIQSPQIEMMIMRTLGFPFEHNRINRGIYIDVLEENIAPGKNTILKLKANRVGGSVSQATMPGVCAINPRSNHCGDGVGGPPQPAHHGGGALALSGIKAVDPRRRKHTKSAAVAGQPHHFSVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171027;
- 90% Identity
- -
- 80% Identity
- -