Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560186.1:14941206-14957925[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.1 5.3e+02 1.9 0.3 1 7 216 222 216 224 0.90

2 14 2.8 1.8e+02 3.3 1.4 1 19 292 310 292 313 0.86

3 14 3.9 2.5e+02 2.9 0.0 2 23 329 351 329 351 0.91

4 14 0.44 28 5.9 0.7 2 23 389 411 388 411 0.95

5 14 1.4 92 4.3 0.7 1 19 733 750 733 753 0.80

6 14 0.21 14 6.8 1.7 1 23 765 787 765 787 0.91

7 14 0.0079 0.51 11.4 0.3 2 23 793 814 792 814 0.97

8 14 0.0012 0.077 13.9 0.3 2 23 915 936 914 936 0.94

9 14 2.2 1.4e+02 3.7 4.6 1 23 951 973 951 973 0.97

10 14 7.4e-07 4.8e-05 24.0 3.3 1 23 979 1001 979 1001 0.99

11 14 0.00052 0.034 15.1 0.6 2 23 1007 1028 1006 1028 0.93

12 14 4.7e-05 0.003 18.4 1.6 2 23 1035 1057 1034 1057 0.91

13 14 1 68 4.7 0.2 1 19 1062 1080 1062 1081 0.89

14 14 0.008 0.52 11.3 0.2 3 23 1094 1115 1093 1115 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.1	5.3e+02	1.9	0.3	1	7	216	222	216	224	0.90
2	14	2.8	1.8e+02	3.3	1.4	1	19	292	310	292	313	0.86
3	14	3.9	2.5e+02	2.9	0.0	2	23	329	351	329	351	0.91
4	14	0.44	28	5.9	0.7	2	23	389	411	388	411	0.95
5	14	1.4	92	4.3	0.7	1	19	733	750	733	753	0.80
6	14	0.21	14	6.8	1.7	1	23	765	787	765	787	0.91
7	14	0.0079	0.51	11.4	0.3	2	23	793	814	792	814	0.97
8	14	0.0012	0.077	13.9	0.3	2	23	915	936	914	936	0.94
9	14	2.2	1.4e+02	3.7	4.6	1	23	951	973	951	973	0.97
10	14	7.4e-07	4.8e-05	24.0	3.3	1	23	979	1001	979	1001	0.99
11	14	0.00052	0.034	15.1	0.6	2	23	1007	1028	1006	1028	0.93
12	14	4.7e-05	0.003	18.4	1.6	2	23	1035	1057	1034	1057	0.91
13	14	1	68	4.7	0.2	1	19	1062	1080	1062	1081	0.89
14	14	0.008	0.52	11.3	0.2	3	23	1094	1115	1093	1115	0.96

Sequence Information

Coding Sequence: ATGTCTGAAGGAAGGAAAAGAAGCAGAAAATCGAAACTGGTTGTTCGCAACGACTATGACTCTGATTCCGAGGTCGTGAATGAGAATGACGCGACCACATTTTTGCAGAAACGACCCAAAATCGAGTGTTTAATAGAGTACCCTAAAGTCATACACACTGAACACCCGTCTTTGCTTGATCATGATTATTGCAAGCCTGGTTCATTTGGCTTTGCTTCACCCTACTACCCACTTTCTGATACCTTCCAGGGTACTTCCTTGAAGTTCATCCAAAGTTCCTCTGACTCTCTGTGTAAAGTTGAAGAGTGTGACAACTTAGAGAAGGCATTAATACCCCCAAAGAGAAAATTTTCTATACTAAGGAAAATGGAATCAGGAGTAAACCAAGCGAGAACCAGCCCAAAACCAGAAATGTTGATGTGTAAATACCAGCCGGACATTATTTTCCGTGTTTCGGAAGATATCGCTGCAAGCTCCAATAACCCAGCCGATAAAATCTTGAATATAGAAATGAGGAACTTGTGGGGGGGCATTCGGAACCCTCCTGATAAGGCTAAACCCCATGATATTGTGATGCAAAAGGCCATAGAATCATGGCAGGTTTGGTACTTAAGTGCAAAGCTCATACGAGATGTACCACTGTTGTACCAATGCCATATCTGCAATGTTGCCTGGTGGAGAATGCAGCCGTTCCGGGAACACTTAGTAATGCACGACATCTCAACCTTGTTGGTGACCCTTAAGGAAAGCGTCCACGAATGCTTGATTGTTGCGAGCGATCAACCGGTCAACAATTTAACCTTCATTGATATTGATGAAGACTGTTGGCGATGCGGCAAAGATGTGGATTTCCACAAAGTGAACACTCAAGTGTACACGTGCCATCGATGCGACAAATACATGTACACATGTTCAGCTCTTGTGGGGCATGAAACTATATGCTTGTATGGGAACATGTCTAACATAAACGTATCTGAAGAAAGGCGCTGTGTCGTTTGCAAACTCGTCATCAGTTCTTTGAATCTAGTGGAAAAACATATGGTAGAAGCTCACTCTGTCCGCTCCGATTTGCCTGTACCcgttgtttataaaaattgcaTACATTGCaaatgtaaatactttacaTTCAACACTCATAACTGTATAAAAAGTACGAAGAACACATCTTGCGAGTATTGTTGCAGGAAATTTGCAACAAAACCACTTGCGTTAGCTCACATGCTCTCACCCCACAACAAGCCCATTAAATGCAGGATATGTTTGGTGCCGCTTAGAGCGAAATGCCTGGAAATGGAGCATATGGTCTACGATCATTCAAATAATTACCAGCTGGCATACAAGTGCACAATATGCATGAAGCAGAATATACTGTTCATGGATGAAATGTCCATCAAAAAGCATAGGCAACACTGGCATCAGAAGAAATTTGATAAGCGGAGATCTTATTATGAAAAGatgctAGTACCAAAGAGTTGTTTACAGGAAATTACCGAGGAAGAAGCATTCGAGAATgATATTCAAATTTACTATACCCGAAGCTCGCCCGAGCCTCCAAACAACAAAATACTTGCATCACCAGAGCATAAATTAGTTTCATCACATAACCTCGGGATCCTCTCAGCTGAGGTTGACGTGACCGTCGACGAAGTTGACGTTAAGAAAGAACCTGTAGAGTATAATGAGAATGATGAAGTGGATTATGAAGAAATGCTCAACAGCATGTTCAATCAAACGGAtgaattaacaaacaaaaacatcattataaataatCCCACAGAGGAGGATTTCAGTAATGTTACCGTCAAAACGGAACCAATTGACGATATTGACATAACTGAAAACTCTGTTGAAAATATCCAAATCAAAACTGAACCTATAGACCAGAATGACATGGAGAATGAGTGTACGCCAATACAAAGTAGAAACCACGAGAATCCAGAGCAAGAGACATTCACCGTCAAAGTAGAACGTGACATCTACATGGATGAACCAAACACTCGCATTATGGTCAAAAATGAAATCCAAGACGAAGAAGATAAAAGTATATCCACCGAATCGATTCCTGTCGATCAACTTATAACAGATCTGGACATGTTCAACAGTCAGAGGGACTTGGTGTCCGAGGAGGTATTAAACCCGGACGAGATGTCATTCGACGTTTTGTCCCCTAGCGGCGTTTACAAGAAGAATAAGGTGTACGCTTGTTCCAAATGCGGCTACACCGCTAGGCACAAGCAATACAAAATACATGTATCGTCCAACTGTGTCGTCTCTCCGGGGATCCATGCGAGTCATCCTTGCAGTAAATGTGGCCTGACATTCGTCATGTTTAGGAATTATGTGCTACATTTCGATAATCACGGCTATGATCACATGTCGTGTCCGAAGTGCGGTGACTCTTTCACCACACTTGTCAGATTGTTGTCACACGTGCAGAAGCATATCAAGAATAACTTTGTCGGGCTGCATGTTCTTGGGAAAGGGGGCGTGGAATCGTCGCGAGCGAAGAAGATGGTTAAATGTCAGGAGTGTCAGGGCGTAGTGTCGCAGGAGGACACGTTCACGCATTGGGAGGCGCACCTCGTGCTCAATAAGAAGGCAGACAAGCTGATTGAGGTGAAGGAAGAGCCTCCTGAATTGACGGTGGACTGCGAAAGAGTCACTATGAACAATAAGCAGTTAGAACCGGCGGCGCTGAAAGCGGCTATAGAGCATCTGCAGTCGACGTCGTCCATTGAGAAGGAATGTGTGATATGCTATCGCGCCTTTTCGCGACGGTACGACGTGAAGCGGCATATCGTGGAGCATTTACTCATGGACGCACATATGAAGAAAGCTAAATACAGaGCGTTCCGGTGTCAGATCTGCTATTCAGGCTTCTCGCATCAGGAGAGATACAAGTTCCATATGCGAGACCACGGGTGCATGCCGATATTCAAGTGTGAACTGTGTAACAAGACGTTCAGTGACTCCAGCAACTTCGCTAAACACAAGAAGACGCATAACGTACGAGTGCTGATCTGCGATCTGTGCAATAAGAAGTTTCACTCGAAAGCGGCGCTGGAGAAGCACATTGTGgAACACGACAATTTGCCGAAGAAAAAGTGTCCGGACTGCGACAAAGTATTCGCGACGAAGCAAAGCTATAAGAAACACAAATATCaaATACATCTCAAAGCCAAGTTCAAATGTGTGCTGTGCGACTTGGCCTTCAACAGTCTGCAGCAGAAATGGAACCACAACTGGGAGGTCCACAAAGAGAGGAAGCAAGCCGCTGACTGTCCCATCTGCCTGAAATCATTCCGCAAGTTCCAGGATGTGCGCGTACACGCGCGTGTCGAGCACCAAGCGGAGGTCGCTGTCATCAAGCAAGCCTCCGCGGAGAAAAACAACATACAGTTCTTCAAAGTGAAGGGTCTTAAAGTGAATGACGAGATGATAGTGGTTCGCAGGTGA
Protein Sequence: MSEGRKRSRKSKLVVRNDYDSDSEVVNENDATTFLQKRPKIECLIEYPKVIHTEHPSLLDHDYCKPGSFGFASPYYPLSDTFQGTSLKFIQSSSDSLCKVEECDNLEKALIPPKRKFSILRKMESGVNQARTSPKPEMLMCKYQPDIIFRVSEDIAASSNNPADKILNIEMRNLWGGIRNPPDKAKPHDIVMQKAIESWQVWYLSAKLIRDVPLLYQCHICNVAWWRMQPFREHLVMHDISTLLVTLKESVHECLIVASDQPVNNLTFIDIDEDCWRCGKDVDFHKVNTQVYTCHRCDKYMYTCSALVGHETICLYGNMSNINVSEERRCVVCKLVISSLNLVEKHMVEAHSVRSDLPVPVVYKNCIHCKCKYFTFNTHNCIKSTKNTSCEYCCRKFATKPLALAHMLSPHNKPIKCRICLVPLRAKCLEMEHMVYDHSNNYQLAYKCTICMKQNILFMDEMSIKKHRQHWHQKKFDKRRSYYEKMLVPKSCLQEITEEEAFENDIQIYYTRSSPEPPNNKILASPEHKLVSSHNLGILSAEVDVTVDEVDVKKEPVEYNENDEVDYEEMLNSMFNQTDELTNKNIIINNPTEEDFSNVTVKTEPIDDIDITENSVENIQIKTEPIDQNDMENECTPIQSRNHENPEQETFTVKVERDIYMDEPNTRIMVKNEIQDEEDKSISTESIPVDQLITDLDMFNSQRDLVSEEVLNPDEMSFDVLSPSGVYKKNKVYACSKCGYTARHKQYKIHVSSNCVVSPGIHASHPCSKCGLTFVMFRNYVLHFDNHGYDHMSCPKCGDSFTTLVRLLSHVQKHIKNNFVGLHVLGKGGVESSRAKKMVKCQECQGVVSQEDTFTHWEAHLVLNKKADKLIEVKEEPPELTVDCERVTMNNKQLEPAALKAAIEHLQSTSSIEKECVICYRAFSRRYDVKRHIVEHLLMDAHMKKAKYRAFRCQICYSGFSHQERYKFHMRDHGCMPIFKCELCNKTFSDSSNFAKHKKTHNVRVLICDLCNKKFHSKAALEKHIVEHDNLPKKKCPDCDKVFATKQSYKKHKYQIHLKAKFKCVLCDLAFNSLQQKWNHNWEVHKERKQAADCPICLKSFRKFQDVRVHARVEHQAEVAVIKQASAEKNNIQFFKVKGLKVNDEMIVVRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01171906;
90% Identity: -
80% Identity: -