Pfla020605.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292448.1:21586-27771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00021 0.013 16.3 5.1 1 23 149 171 149 171 0.97 2 22 7.7e-07 4.7e-05 24.0 4.2 1 23 177 199 177 199 0.97 3 22 4.4e-06 0.00027 21.6 0.7 1 23 205 227 205 227 0.99 4 22 7.3e-07 4.4e-05 24.1 0.4 1 23 233 255 233 255 0.98 5 22 2.2e-06 0.00014 22.5 3.4 1 23 261 283 261 283 0.98 6 22 6.4e-05 0.0039 17.9 2.5 1 23 289 311 289 311 0.97 7 22 3.5e-07 2.2e-05 25.0 1.2 1 23 506 528 506 528 0.98 8 22 1.2e-05 0.00072 20.3 3.6 1 23 533 555 533 555 0.97 9 22 0.00022 0.013 16.3 4.4 2 23 561 582 560 582 0.97 10 22 1.4e-05 0.00084 20.0 0.3 1 23 588 610 588 610 0.98 11 22 4.9e-05 0.003 18.3 2.2 1 23 615 638 615 638 0.97 12 22 1.3e-05 0.00078 20.1 2.0 1 23 650 672 650 672 0.98 13 22 2.3e-06 0.00014 22.5 0.7 3 23 680 700 679 700 0.98 14 22 4.3e-06 0.00026 21.6 3.6 1 23 706 728 706 728 0.96 15 22 1.9e-05 0.0012 19.6 2.2 1 23 734 756 734 756 0.97 16 22 3.3e-05 0.002 18.9 0.5 1 23 762 784 762 784 0.98 17 22 2.9e-06 0.00018 22.1 1.8 1 23 791 813 791 813 0.97 18 22 4.2e-05 0.0026 18.5 0.7 1 23 819 841 819 841 0.96 19 22 1e-07 6.2e-06 26.7 0.2 1 23 847 869 847 869 0.98 20 22 2e-06 0.00012 22.7 0.3 1 23 875 897 875 897 0.95 21 22 0.00047 0.029 15.2 3.7 1 23 903 926 903 926 0.97 22 22 1e-06 6.3e-05 23.6 3.7 2 23 932 953 931 953 0.96
Sequence Information
- Coding Sequence
- ATGGCGTTGAACTTATCAGTTGCTGCTCCAACTGAAGAAATAGAACATATTGTGGTCAAATGTGAACCTTTTGAAATGGACATGAATCAACAGCTACCTGATAGTCCACTGTCTACATCTATTGGTGACCCTCAAATTATGATGAAGGATGAACCGcaagatgaagaagatgaaaGTACACATTTCCTAgctattaaagaaaaaaaaggagTTTCAAATAAAGAAACCAAGGTCAAAGCTGAAGGTTACTTTATAGAAATTGAAATGGGCACTGTTCAGCCTCCATTGCCCTCTCCGCTGTCCACCAGTGATCATTCACACTCCGGGGCTTCAGGGACCATCAGTGAAGAACAATCAAAGATAAAAGAGTGGGCCTCTCGGAACAGCCCAGAACCTCATCCAGAGAGCTTAGAGTACAACATTATAGATGATTCAGATTTGTACTTCCACTGTGATGAATGTGATGAAAAATTTGTTAGGAAATGTGACCTTGAGAAACACCTAAAATACCATTCCGCAGAAAAGCAATTTGCCTGCAATGGATGTTACAAAAAATTTACTCATAAAAGCGATCTGAAAAGACATATGAAAATTCatactggagaaaagccatacaCCTGCAATATGTGCGAGAAGAAGTTCTCCGCAGCTAGTTCCCTAAAACTGCATTTGCGAGTTCATAGTGGTGAAAAGCCATATGCTTGTAATAGTTGCAAAAAACCTTTTATAGACTCTAGTGCATTAAAAATCCATATGAGGACTCACACTGGGGAGAAGCCATTTGCGTGCCATCGTTGCGACATGACATACACACGGAAAGACTCTCTTGTGAAACACATGCGGACTCACATCGGTGACACACCCTTCGTCTGCAGCAGATGTCATCAAAGATTTACAACACAAGatgatttaaaattacatttacaaGGACATATTGCTAAGAGTTTTTCAAAAGCTGGCAATTTGCATAAAAATCTTACAGGTGTAAAACCGTATGCCTATGTTGCATGGTGCATGTTGCAGTTGCGTGTTGCGGACGCGCTGTGCTTCGTGTGCGTCGCGCAGCTGCAGAGATGTCGTCGGTTCGCGGAGACGGCGCGCAGAGCCACCGCCGTACTCACACAGATAGCCCGCAAAGGACTAGAGGCAAATCAAGAAACACTAATATCATTGAACATTAAAACAATTCAAAACTTATCCATGAGCGCTGTGAAGACAATGGGGGTAGGTGACTCTGAGTGCGGCAGCACTGAAGGTACATTCAACGAAGAAAGTGAAATAGCCGTCAAACAAGAAACTACAGTCGATGACCAAGAAATTATCAAAATTGAAGAAAGCACTTATGTTGATGATGTGGAAACAAGAGAAATGTTCAGAGATGTGAAACCACTCAAGTTAGAAGGCAGCTTCGCATCAAAGGGTACTAAGGATTCCTATTGTATGGAACGCAGCAAAAACTTcgcaaataaaactaaactggGGAAAGATAACAAGCGAATTCTCTGTAAAAAGTCATATGTTTGTGATATTTGTAATAAAGCATTCTCTTTTAAATTCAATCTGCAACAACACATACGAAACCACTCCGGTGAGAGATTCGCTTGCAGCGAGTGTGATAAAACATTCACACAACACAGCTATCTGAATCTACACAGAACAACTCATTCCGGTGAACGACTCACTTGCGACTCGTGCAACAAAGCTTTCTGTAATAAATACGTTCtgcaaaaacacaaaagaaCTCACACGGGAGAAAAGCCATTCAGCTGCGACCTGTGCGCTAAAACGTTCACAGAAAACGGCAGCTTAATCAAGCACATGAACATTCACACCGGAGAGCGGTTCCCTTGCAGCCGATGCGAGAAGACCTACTCCCAAAAACACGCTCTCAACTCTCATCTCAAGATGATCCACAACGGAGAGGAACCGCAACCGAAGCGTCGAGCGTATGCCTGCGACTCTTGCAAGAACACTTTCACCCGGCGTACTAACTTGAGAATCCATATGAGATCCCACGAAGCGAAGGAGGCTAGCGCGTGCGATCAATGCGGCGAGTCCTTCGACAATCCAACCCATCTGCGAATCCACTTGAGGACGCACGCGGAAGAGATCCACCACGCGTGCGGACAATGCAACAAGACCTTCACCCGAACCATCAATCTCAAGAACCACATGAAGACCCACACCGAGGATAAGCCCCACGTCTGCGAGCGATGCAACAAATCATTCTCCCTCCCGACCTACCTGCAGCGGCACCTCCTCACCCACTCCGAGGTGAAAGCGTACGCGTGTCCGCAGTGCGGCAAAACCTACGCCGTCAAAAGCAGCATGCTGAAGCATTCCAAGACGCACTCGGGCAAGACTCACACGCACACCTGCGACCGCTGCGCCAAGGAGTTCACGGACAACAGCAACCTGCAGAAGCACATGTTGGTGCATTCCGGGGCGAGGCCCCACGCCTGCGCCCTCTGCGGGAAGGCCTTCGCGCGCAAGTTCCAGCTGAACGAGCACTCGCGCGTGCACACGGGGGAGAAGCCCTACGCCTGCCCGGACTGCGGCAAGGCCTTCACGCAGAGCGGCTCGCTGAGCCTGCACAGGAGGACGCACTCGGGGCGGAGGCCTTTCCTCTGCGACGTCTGCGAGAAGAGCTTCGCGGACAAGTACGGGCTGCAGAAGCACCTGAGGATCCACACGGGAGAGAAGCCCTACGCGTGCTCGCAGTGCCGGCAGAGCTTCACGTACAACAGCAGTCTGCACGATCACGTGCGCCGGTTCCACTCGGGGCAGAAGCTCGTCTGCGACAGATGCTTCAAGAGCTTCAGCCGGAACAGCCATCTGAAGAGACACATGAATATACATCTACGGGAAAAGCACTCGTTTATTACCTTGTGA
- Protein Sequence
- MALNLSVAAPTEEIEHIVVKCEPFEMDMNQQLPDSPLSTSIGDPQIMMKDEPQDEEDESTHFLAIKEKKGVSNKETKVKAEGYFIEIEMGTVQPPLPSPLSTSDHSHSGASGTISEEQSKIKEWASRNSPEPHPESLEYNIIDDSDLYFHCDECDEKFVRKCDLEKHLKYHSAEKQFACNGCYKKFTHKSDLKRHMKIHTGEKPYTCNMCEKKFSAASSLKLHLRVHSGEKPYACNSCKKPFIDSSALKIHMRTHTGEKPFACHRCDMTYTRKDSLVKHMRTHIGDTPFVCSRCHQRFTTQDDLKLHLQGHIAKSFSKAGNLHKNLTGVKPYAYVAWCMLQLRVADALCFVCVAQLQRCRRFAETARRATAVLTQIARKGLEANQETLISLNIKTIQNLSMSAVKTMGVGDSECGSTEGTFNEESEIAVKQETTVDDQEIIKIEESTYVDDVETREMFRDVKPLKLEGSFASKGTKDSYCMERSKNFANKTKLGKDNKRILCKKSYVCDICNKAFSFKFNLQQHIRNHSGERFACSECDKTFTQHSYLNLHRTTHSGERLTCDSCNKAFCNKYVLQKHKRTHTGEKPFSCDLCAKTFTENGSLIKHMNIHTGERFPCSRCEKTYSQKHALNSHLKMIHNGEEPQPKRRAYACDSCKNTFTRRTNLRIHMRSHEAKEASACDQCGESFDNPTHLRIHLRTHAEEIHHACGQCNKTFTRTINLKNHMKTHTEDKPHVCERCNKSFSLPTYLQRHLLTHSEVKAYACPQCGKTYAVKSSMLKHSKTHSGKTHTHTCDRCAKEFTDNSNLQKHMLVHSGARPHACALCGKAFARKFQLNEHSRVHTGEKPYACPDCGKAFTQSGSLSLHRRTHSGRRPFLCDVCEKSFADKYGLQKHLRIHTGEKPYACSQCRQSFTYNSSLHDHVRRFHSGQKLVCDRCFKSFSRNSHLKRHMNIHLREKHSFITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170770;
- 90% Identity
- -
- 80% Identity
- -