Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560186.1:12954997-12962911[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00019 0.012 16.4 5.1 1 23 149 171 149 171 0.97

2 21 5.6e-07 3.6e-05 24.4 4.4 1 23 177 199 177 199 0.98

3 21 4.5e-06 0.00029 21.6 0.9 1 23 205 227 205 227 0.99

4 21 4.1e-07 2.6e-05 24.9 0.3 1 23 233 255 233 255 0.98

5 21 0.0084 0.54 11.3 0.3 1 17 261 277 261 278 0.93

6 21 3.3e-07 2.1e-05 25.1 1.2 1 23 441 463 441 463 0.98

7 21 2.7e-07 1.8e-05 25.4 2.0 1 23 468 490 468 490 0.97

8 21 0.0002 0.013 16.4 4.4 2 23 496 517 495 517 0.97

9 21 1.3e-05 0.00082 20.1 0.3 1 23 523 545 523 545 0.98

10 21 1.1e-05 0.0007 20.4 2.3 1 23 550 573 550 573 0.97

11 21 2e-06 0.00013 22.7 3.8 1 23 585 607 585 607 0.98

12 21 7.5e-07 4.8e-05 24.0 1.2 3 23 615 635 614 635 0.98

13 21 2.5e-06 0.00016 22.4 4.6 1 23 641 663 641 663 0.96

14 21 0.00011 0.0069 17.2 1.4 1 23 669 691 669 691 0.97

15 21 3e-05 0.002 19.0 0.5 1 23 697 719 697 719 0.98

16 21 8.7e-07 5.6e-05 23.8 1.7 1 23 726 748 726 748 0.97

17 21 2.8e-05 0.0018 19.1 0.2 1 23 754 776 754 776 0.97

18 21 9.5e-08 6.2e-06 26.8 0.2 1 23 782 804 782 804 0.98

19 21 1.9e-06 0.00012 22.7 0.4 1 23 810 832 810 832 0.95

20 21 0.0003 0.02 15.8 3.2 1 23 838 861 838 861 0.97

21 21 9.8e-07 6.4e-05 23.7 4.2 2 23 867 888 866 888 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00019	0.012	16.4	5.1	1	23	149	171	149	171	0.97
2	21	5.6e-07	3.6e-05	24.4	4.4	1	23	177	199	177	199	0.98
3	21	4.5e-06	0.00029	21.6	0.9	1	23	205	227	205	227	0.99
4	21	4.1e-07	2.6e-05	24.9	0.3	1	23	233	255	233	255	0.98
5	21	0.0084	0.54	11.3	0.3	1	17	261	277	261	278	0.93
6	21	3.3e-07	2.1e-05	25.1	1.2	1	23	441	463	441	463	0.98
7	21	2.7e-07	1.8e-05	25.4	2.0	1	23	468	490	468	490	0.97
8	21	0.0002	0.013	16.4	4.4	2	23	496	517	495	517	0.97
9	21	1.3e-05	0.00082	20.1	0.3	1	23	523	545	523	545	0.98
10	21	1.1e-05	0.0007	20.4	2.3	1	23	550	573	550	573	0.97
11	21	2e-06	0.00013	22.7	3.8	1	23	585	607	585	607	0.98
12	21	7.5e-07	4.8e-05	24.0	1.2	3	23	615	635	614	635	0.98
13	21	2.5e-06	0.00016	22.4	4.6	1	23	641	663	641	663	0.96
14	21	0.00011	0.0069	17.2	1.4	1	23	669	691	669	691	0.97
15	21	3e-05	0.002	19.0	0.5	1	23	697	719	697	719	0.98
16	21	8.7e-07	5.6e-05	23.8	1.7	1	23	726	748	726	748	0.97
17	21	2.8e-05	0.0018	19.1	0.2	1	23	754	776	754	776	0.97
18	21	9.5e-08	6.2e-06	26.8	0.2	1	23	782	804	782	804	0.98
19	21	1.9e-06	0.00012	22.7	0.4	1	23	810	832	810	832	0.95
20	21	0.0003	0.02	15.8	3.2	1	23	838	861	838	861	0.97
21	21	9.8e-07	6.4e-05	23.7	4.2	2	23	867	888	866	888	0.96

Sequence Information

Coding Sequence: ATGGCGTTAAACTTATCAGCTGCTGCTCCAACTgaagaaatagaaaatattgtGGTCAAATGTGAACCTTTTGAAATGGACATGAATCAACAGCTGGCTGATAGTCCACAGTCTACATCTATTGGTGACTCTAAAATTATGGTTAAGGATGAACCGCAAGATGAAGAGgatgaaaatacaaatttcGTAGCTATTAAAGAAGAAAAGGGAGTTTCAAATAAAGAAACCAAGGTCAAAGCTGAAAGTTACTTTATAGAAATTGAAATGGGCACTGTTCAGCCTCCTATGCCCTCTCTGCTGTCCACCAGTGATCATTCACACTGCGGGGCTTCAGAGACCATCAGTGAAGAACAATCAAAGATAAAAGAGTGGGCCTCTAAGAACAGACCAGAACGTCAACCAGAGAGCTTAGAGTACAACATTATAGATGATTCAGATTTGTACTTTCATTGTGATGAATGTGATGAAAAATTTGTTAGAAAATGTGACCTTGAGAAACACTTGAAATACCATTCTGCAGAAAAGCCATTTGTCTGCAGCGGATGTTACAAAAAGTTCACTCATAAAAGTGATCTGAAAAGACATATGAAAATAcatactggagaaaagccatatacCTGTGATATGTGCAAGAAGAAGTTCTCTGCAGCTAGTTCTCTAAAACTGCATTTGCGAGTTCACAGTGGTGAAAAGCCATATGCTTGTAACAGTTGCAACAAACCTTTTATAGACTCCAGTGCTTTAAAAATTCATATGAGAACTCATACTGGGGAAAAGCCATTCGTTTGCCACCGCTGCGACATGACATATACACGGAAAGACTCTCTGATACATGTTGCAGGTGCACTCTGTTTTGTGTGCGTCGCGCAGCTGCAGAGATGTCGTCAGTTCGCGGACACTGCACGCAGAGCCACCATCATACTCACTCAGATAGCCAGCAAAGGACTAGAgGCAAATCAAGAAACACTAATAGCATTGAACattaaaacaattcaaaacTTATCCATGAGCGCTGTGAAGACAATGAGAGTAGTTGACTTTGAGTGCGGCAGCACTGAAGGTACATTCAATGAAGAAACTGAAATAGCCGTCAAACAAGAAACTACAGTCGCTGACCAAGAAATTATCAAAATTGAAGAAAGCACTTATGTTGATGATGTTGAAACAGAAGAAATGTTCAGAGATATGAAACCACTCAAGTTAGAAGGAAGCTTTGCATCAAAGGGTACTAAGGATTCCTATTGTATGGAACGCAACAAAAACTTcgcaaataaaactaaacttgGGAAAGTTAACAAGCGAATTCTCTGTAAAAAGCCATATGTTTGTGAcatttgcaataaagcattctcttttaaatttaatttgcaaCAACACATCCGAAACCACTCTGGTGAGAGATTCGCTTGCAGCGAGTGTGATAAAACATTTACTCAACAGAGCTATTTGAATCTACACAAAAGAACTCACTCTGGAGAACAACTCACTTGCGACTCGTGCAACAAAGCTTTCTGTAATAAATACGTTCTGCAAAAACACAAAAGAActcacactggagaaaagccatttAGTTGCGACTTGTGTGCTAAAACGTTCACAGAAAACGGCAGCTTAATCAAGCACATGAACATTCACACCGGAGAGCGGTTCCCTTGCAGCCGATGCGAGAAGACCTTCTCCCAAAAACACGCTCTCAAGTCACATCTCAAGATAATCCACAACGGAGAGAAACCACAACCGAAGCATAGAGAGTATGCCTGTGACACTTGCAAGAAGACTTTCACCCGGCACACTAACTTGAGAATCCATATAAGATCCCATGCAGCAAACGAGCCTAGCGCGTGCGACCAATGCGGCAAATCCTTCGACAGTCCAACTCATCTGCGAATCCATTTGAGAACGCACGCGGAAGAGATCCACCACGCGTGCAGACAATGCAACAAGACCTTCACCCGAAGCATCAATCTCAAGAACCACATGAAAACCCACACCGAGGATAAACCCCACGTCTGTGTGCGATGCAACAAATCATTCTCCCTTCCGATCTACCTGCAGCGTCACCTCCTCACCCACTCCGAGGTGAAAGCGTACGCCTGTCCGCAGTGCGGTAAAACCTACGCCGTTAAAAGCAGCATGCTGAAACATTCGAAGACACACTCGGGCAAGAGTTACACGCACACCTGCGACCGCTGCGCCAAGGTGTTCACGGACAACAGCAACCTGCAGAAGCACATGTTAGTGCATTCGGGGGCGAGGCCCTACGCCTGCGCCCTCTGCGGAAAGGGCTTCGCGCGCAAGTTCCAGCTGAACGAGCACTCGCGCGTTCACACGGGGGAGAAGCCCTACGCCTGCCCGGACTGCGGCAAAGCCTTCACGCAGAGCGGCTCGCTGAGCCTGCACAGGAGGACGCACTCGGGACGGAGGCCGTTCCTCTGCGACGTCTGCGAGAAGAGTTTTGCGGACAAGTATGGGCTGCGAAAGCACCTGAGGATCCACACGGGGGAGAAGCCCTACGCGTGCGAGCAGTGCCGGCAGAGCTTCACGTACAACAGCAGTCTGCACGACCACGTGCGCCGGTTCCACTCGGGGCAGAAGCTCGTCTGCGACAGATGCTTCAAGAGCTTCAGCCGGAACAGCCATCTGAAGAGACACATGAAGATACATTTACGGGAAAAGCAGTCATTTATTACCTTGTGA
Protein Sequence: MALNLSAAAPTEEIENIVVKCEPFEMDMNQQLADSPQSTSIGDSKIMVKDEPQDEEDENTNFVAIKEEKGVSNKETKVKAESYFIEIEMGTVQPPMPSLLSTSDHSHCGASETISEEQSKIKEWASKNRPERQPESLEYNIIDDSDLYFHCDECDEKFVRKCDLEKHLKYHSAEKPFVCSGCYKKFTHKSDLKRHMKIHTGEKPYTCDMCKKKFSAASSLKLHLRVHSGEKPYACNSCNKPFIDSSALKIHMRTHTGEKPFVCHRCDMTYTRKDSLIHVAGALCFVCVAQLQRCRQFADTARRATIILTQIASKGLEANQETLIALNIKTIQNLSMSAVKTMRVVDFECGSTEGTFNEETEIAVKQETTVADQEIIKIEESTYVDDVETEEMFRDMKPLKLEGSFASKGTKDSYCMERNKNFANKTKLGKVNKRILCKKPYVCDICNKAFSFKFNLQQHIRNHSGERFACSECDKTFTQQSYLNLHKRTHSGEQLTCDSCNKAFCNKYVLQKHKRTHTGEKPFSCDLCAKTFTENGSLIKHMNIHTGERFPCSRCEKTFSQKHALKSHLKIIHNGEKPQPKHREYACDTCKKTFTRHTNLRIHIRSHAANEPSACDQCGKSFDSPTHLRIHLRTHAEEIHHACRQCNKTFTRSINLKNHMKTHTEDKPHVCVRCNKSFSLPIYLQRHLLTHSEVKAYACPQCGKTYAVKSSMLKHSKTHSGKSYTHTCDRCAKVFTDNSNLQKHMLVHSGARPYACALCGKGFARKFQLNEHSRVHTGEKPYACPDCGKAFTQSGSLSLHRRTHSGRRPFLCDVCEKSFADKYGLRKHLRIHTGEKPYACEQCRQSFTYNSSLHDHVRRFHSGQKLVCDRCFKSFSRNSHLKRHMKIHLREKQSFITL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01171641;
90% Identity: -
80% Identity: -