Pfla004177.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma flavofasciatum
Gene Symbol
Hr39
Assembly
GCA_958496245.1
Location
OY292423.1:2936206-2955878[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.37 2.9e+03 -2.3 0.3 77 88 142 153 45 247 0.51
2 4 3 2.3e+04 -5.8 6.5 120 163 270 313 178 357 0.61
3 4 4.3e-08 0.00034 20.5 0.1 1 21 445 465 445 477 0.91
4 4 1.5e-63 1.2e-59 203.2 0.0 164 408 507 764 479 764 0.84

Sequence Information

Coding Sequence
ATGAACACCGCGATGTCAAGCGACGCTGACGCGGTCAAGGTGGAGGGGGGTCACGTGTCCGTCACTACGATCAGCATGTCGGGCCCGGAAACGAGCAATGggCAATTCTCGTACAGCTCGAGTGGGGTCCGCATCAGCGTGTCTTCGGTGCCCCATGACGAAGACTCTACCGATGCGGAGATCTCCAAAATCGACTTCACTCAACATCAATTCGAGGTGAACATGCGAAACAAGAAGCAAAGGTCGTCCAGCGGCGCGCAATACGAAGGCCAGGCCAATGATAGAGAGCGGCCCATGTCCTGGGAAGGGGAGCTGTCCGATTCAGAGATGGTCATCGATACCAGCGTCAATAATGATGAGAACAGCAACTCCGCAGACCTGCAATCCTCCCGCGACTCGATCGATACGCTCCGAAACGTCACCATCAAGCAGGAACCGATGAAGAACGAATGCTCGATGTTCCAAAGCCTGGACGACCAGAGGGTACTGGACCTGAAGTACACAGCGCCGCTCCAGCAGCACCAGAGAAGCTTTAGCATGAACAGAATACCACCGCTCTCAGACACGCTCCCTTCTTTACCCAGAAGGCCGTCCTCACCCACGAACAGTGCGAAATCGCTTGCTCTCTCCGACCAGGGCACTATGCCGATCATGCCGCACTCTTCCATCGGGGAGATACAAAACTTGACTATCAAGAAGGAGATGCTGTCAGaattaaaATGCGAACCATCACTGGGTATGGAGAAGCTATTAGGAACAGCGCTCGGCTCGCCTCTCACGGGCAGAATTCAACGCGTCCAATCCAGCGCAAGTACCGACTCCGCCGTACATTCCATGTACACACACAGTGTGTACAGCAGTCCGTCCGCCAGCCCTCGCGCGAACCGGCACTATACGCCGTCTCTGTCGCGCAACAACAGCGACGCATCGCACTCTTCCTGTTACTCATATAGCTCCGAGTTCTCGCCCACACATTCCCCGGTACAGGGTCGCCACCCTCACGTAGTGTATAGAGAAGCCACCGGTGTGTTCCCTGCCTCGCCGGCTCACGACGAAGACACGGAGACAGACGACAGACTCCATCATCACCAGGGTATCAGTCGACAACAGCTTATCAATAGTCCATGTCCGATATGCGGCGACAAAATCAGCGGTTTCCACTACGGGATATTCTCGTGCGAATCCTGTAAAGGTTTCTTTAAGCGCACGGTTCAGAACCGGAAGAATTACATGTGCCTACGGGGTAGTAACTGCCCAGTGACGGTTGCAACCAGGAAGAAATGTCCCGCCTGCCGGTTCGACAAGTGTCTTGGCTGTGGCATGAGATTAGAAGCAATAAGGGAAGACCGGACGCGCGGCGGTCGGTCCACGTACCAATGTTCGTACACGCTATCCGGCGCGGCGTCAACGGGCTCGCTGCTTTCCGCACATGTACCGACCACGCTCCGACACGCTTCAAGCTTGAACTGCGTAAACGGTCCAGGATCGTACAACAGTAGAGGTGAATCCAGCAACAGTCGACTGACGCCCGACATCCCACCATTATTGCAAGAAATAATGGACGTAGAACACCTATGGCAGTACAACGAATCCGAACTGAACCGGCTAGGCAAGTCCACAGGCGGCAGCCCCTCAGCCAACCCCCTGCTCGCGGCGAGCGGGATCACGGCACAGAACTCCAGTCCCGACTTCCTGGCAGACCTTTGTAACATTGCCGATCATCGCCTCTACAAGATTGTGAAATGGTGCAAGAGTCTACCCCTGTTCAAGAATATTTCGATCGACGATCAAATTAACCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTCTCGTGCTGCTACCGCGGCGTGAGCACGCCGGGCGAGGTGCGCGTGGGCGGCGGCACGGGGATCACACTGCACCACGCTGCCAAGCTGGGCTTGACGCCTTGCATAGAGCGGATGCTGAGTTTCACCGACCATCTGAGGCGGCTGCGGGTCGACCGATACGAGTATGTCGCGCTGAAAGTCATCGTTCTTCTCACATCCGATGCACCGGATCTGCGTGAATCTGAGAAAGTGCGTGCGTCACAGGAGAAGGCATTGGCAGCGCTGCAGGCGTACATCGCATCGCATTCGCCGCAGACGCCGGCCAAGTTCGGAGAGTTGCTGCTTCGGATCCCGGAGCTGCAGCGGACTTGCCAATTCTTCATGCAAGTCGGCAAAGAGATGCTTAATCCAGCCAACAAAAACAAAGATGGCGAAGGGCCGAGCTTCAATCTCCTCATGGAACTCCTCCGAGGGGATCACTGA
Protein Sequence
MNTAMSSDADAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSVPHDEDSTDAEISKIDFTQHQFEVNMRNKKQRSSSGAQYEGQANDRERPMSWEGELSDSEMVIDTSVNNDENSNSADLQSSRDSIDTLRNVTIKQEPMKNECSMFQSLDDQRVLDLKYTAPLQQHQRSFSMNRIPPLSDTLPSLPRRPSSPTNSAKSLALSDQGTMPIMPHSSIGEIQNLTIKKEMLSELKCEPSLGMEKLLGTALGSPLTGRIQRVQSSASTDSAVHSMYTHSVYSSPSASPRANRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREATGVFPASPAHDEDTETDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGSNCPVTVATRKKCPACRFDKCLGCGMRLEAIREDRTRGGRSTYQCSYTLSGAASTGSLLSAHVPTTLRHASSLNCVNGPGSYNSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELNRLGKSTGGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQINLLINSWCELLVLSCCYRGVSTPGEVRVGGGTGITLHHAAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPDLRESEKVRASQEKALAALQAYIASHSPQTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGEGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01161468;
90% Identity
iTF_00318151;
80% Identity
iTF_01171555;