Paff019093.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma affinitatum
Gene Symbol
-
Assembly
GCA_961405105.1
Location
OY560204.1:5759163-5776400[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.0076 17.1 0.1 3 23 143 163 142 163 0.97
2 19 1.2e-06 7.6e-05 23.4 1.1 1 23 169 191 169 191 0.99
3 19 6.6e-06 0.00043 21.0 2.7 1 23 197 219 197 219 0.99
4 19 4.4e-06 0.00028 21.6 2.6 1 23 234 256 234 256 0.98
5 19 0.00011 0.0068 17.3 0.6 1 23 271 293 271 293 0.98
6 19 6e-05 0.0039 18.0 3.1 1 23 308 330 308 330 0.98
7 19 4.2e-07 2.7e-05 24.8 1.5 1 23 345 367 345 367 0.99
8 19 0.00019 0.012 16.5 2.8 1 23 373 395 373 395 0.98
9 19 9.4e-05 0.0061 17.4 0.1 1 23 402 424 402 424 0.97
10 19 1.3e-05 0.00085 20.1 2.1 1 23 430 452 430 452 0.99
11 19 0.043 2.8 9.1 1.8 1 23 459 481 459 481 0.98
12 19 7.1e-07 4.6e-05 24.1 2.3 1 23 487 509 487 509 0.99
13 19 0.049 3.2 8.9 1.8 1 23 516 538 516 538 0.98
14 19 8.5e-07 5.5e-05 23.9 3.7 1 23 544 566 544 566 0.99
15 19 0.00055 0.036 15.0 0.7 1 23 573 595 573 595 0.99
16 19 3.2e-06 0.00021 22.0 1.9 1 23 601 623 601 623 0.98
17 19 0.0023 0.15 13.0 0.3 1 20 629 648 629 651 0.93
18 19 4.5e-05 0.0029 18.4 1.4 2 23 658 679 657 679 0.96
19 19 4.2e-06 0.00027 21.7 1.4 1 23 685 708 685 708 0.97

Sequence Information

Coding Sequence
ATGGCACGGGGCGTGGGGGTCCCCGTGCCTCCCCCCGGCGACCTACTCGCCACTATATCCATGTTCGAACAACAGATTAAAGCTGAACCCATGAGTTTCTACCACCCTCACGTGACTCATGTCCACCCTGGCCCCCCAACGATAGTCCGTTCGGAGTCCAACCACCACCTAATGAACCCCCATCACCACCAAGAAGACTCAAAAGACAGCCTCATCCAGCATCAAGTACAGCACCAGCAAGATCTCATGGAACAGCACCAGCAACAGGATGATGAGCTGAGCTTCAAAGGAATGGAAGATGAAGGTGTTGATATGGATATGGATGGCAGACAGTGTTCACAGggtATGGGAGTGGACATGGGATCAATTCAGACAAAAATGGAGGTAAACGGTGGCCAATCTACTCCTCGATCTAAACCACAAGCCTGCAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTGCATATGAAGCTTCATTCAGGAAACAAGCCTTTCCAATGCTCAGTATGCGACGCAGCTTTTTGCCGGAAGCCTTACTTGGAAGTTCACATGCGCACGCACACAGGCGAGCGACCGTTTCAGTGCGACTTGTGCCTGAAGCGCTTCACACAGAAGTCCAGTCTCAATACGCACAAACGAGTGCACACAGATGAGCACTTGCACGCGTTGGTGGCGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAACACAGACGTGCACTGCTGGTCAAGAATCGGCCCTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCGAGTTTGGGCCGTCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGCGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTCGGACGTCATGGGAAAATACACACTGAAGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCCTGGGCGTCCATTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCTCCTACCTGGACATTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCGAGCCTCAATATACATAAGAGGACGCATTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGTCTGCAGTGCCCTGCCGCCTTCACGTGCAAGCAATACCTGGAGATCCACAACCGCACGCACACAGGCGAGCGCCCCTACCAGTGCGAAGTGTGTCACAAGAGATTCGCGCAAAAGTCTACACTTAACATTCACAAACGAACGCACACAGTGCAAGGACGGCCGTACCAATGTATGGAGTGCCCGGCGGCGTTCACGTGCAAGCCGTACCTGGAGATACACATGCGAACTCACACCGGGGAGCGCCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCAACGCTCAACATTCACAAGCGAATACACACCGGTGAACGCCCATACGCTTGTGATATATGTCAGAAACGTTTTGCTGTGAAGAGTTACGTCACAGCTCATAGGTGGTCGCACGTGGCGGATAAGCCGCTGAACTGCGACCGGTGCTCAATGACGTTCACTTCCAAGTCTCAGTTCGCGCTCCACATCCGCACCCACACGGCCGGCCCGTGCTACGAGTGCAGCGTCTGCGGGCGGACCTTCGTCCGAGACAGCTATCTTATACGTCACCATAACCGCGTGCACCGAGAGAATCACAGCAACGTATCGGCCAATAGCATCGGCAACCTGAACAGCGTCGCTACAAACACCAACAACTCTAACCACGGCGGCTTCGACTCGCCAGGAGTCTGCGACTTAAGttttgttcCGATGGGGAACCGTTACATGACATCGCAGGGCACACAGATTTCGATGCAAGACGCTCAGAAGATGTCGGCTATGTCGCCCCAGTCCATTGCGTCTATTTCTTCGCCTCCTCCGCCGCACACGCCAACACCCCAGCCCCAGATGTCTGGCCCACTGCACATGGCAGACTGA
Protein Sequence
MARGVGVPVPPPGDLLATISMFEQQIKAEPMSFYHPHVTHVHPGPPTIVRSESNHHLMNPHHHQEDSKDSLIQHQVQHQQDLMEQHQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSIQTKMEVNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCSVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVAKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLVKNRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKARPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVPGRPFACGQCPAAFARRSYLDIHLRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCEVCHKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGNLNSVATNTNNSNHGGFDSPGVCDLSFVPMGNRYMTSQGTQISMQDAQKMSAMSPQSIASISSPPPPHTPTPQPQMSGPLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00737671;
80% Identity
-