Paff021327.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- egg
- Assembly
- GCA_961405105.1
- Location
- OY560207.1:3971553-3988271[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3 8.4e+03 -3.1 0.1 29 38 347 356 319 357 0.58 2 2 3.8e-15 1.3e-11 44.4 0.0 4 75 388 452 385 454 0.90
Sequence Information
- Coding Sequence
- ATGCCAATCTGCAGAATATATAGAAAAACAGTCGCGCTAGAAATAGTTAATTTACAGAAAGAGGAGATATCTGTGGTGAAACTGTCCGCGGAATCAGCGCCGGCGTCTTTGCCGCCGTGCGGTGAGATCGTCCGACCGCCATTGAAGAACGGGATGGCCACATACGCCATGAGGAACGCATTCGGTACCTGGCTCAAAGGGAAAATCGTCGAAGTACAATCGAAGAATGCGGGGCAACAGTTCACGCAGTGCCGTGTCAAATTCGAGCACAAAATCAAAAACCCTTGCAAGGTTTTACCGGCGAGATGTCTCGCCTACCCCGAACCTTGCGAAGTCAGAATGACTAtcgGCACACGTGTGATAGCCCTATTCAAAGATCCTCAAAACACGGCGCGTCGGGACTCGTTCTATTCGGGGGTGGTCGCTGAAATACCCAATCCTGTGAATAACTACAGGTATCTGGTGTTTTTCGACGACGGCTACGCTCAATACGTACACCACCAGGACACGCGCATAGTCTGCGAGTCCAGCAGCCTCGTGTGGGAGGAGGTGCATCCGTTCATACGCGACTTCATATGCAACTACCTGCTGTCTTACCCGGAACGGCCCATGGTGCGACTTCACGCGGGGGAGAAACTCAAGACCGAGTGGAACGGTAAATGGTGGGACTCGAAGGTGCTCCAAGTGGACGCGTCCATAGCCCTCATACATTTCGACGAGGACAACCGCACGGAATGGATCTACCGCGGCTCGACCCGACTTGCGCCGCTGTATCTGGAGTTACAGGCGGCAGAGAAAGCGGGCGAGGGGAAGACTAGGTCCCGCCTGCCGAGGAGCAAAGCTCAGTTGCGGTCGAATATGCCGTGCGTTGAATACACGCGGTCCGACGGCCAAGCAGCGACCAAACCGACCGCAGAGACGCAAGTACAGCAGCAGCATAATGAGGAATTGCGCCGTCAAAGATCAGTGGCCAAGAAATCTACCACGACGACTGCGCAAGCGCCGACTGTCGTCCAAAGCCCGACGCCATTCGAAGGTGTCATCAGTCGAGTTGTGTACTACACCCCGAAAAATGCCGTGAAGCCGTACAAGATGTCCTCCCACACTTGCACTATAAAATGCAAGCGGGTGGACCTGCTGTCGCTGAAGGAGTTGCGGACATATAATCCGCTCGCGAAGCCGCTGCTCAGCGGATGGGAAAGACAAACAGTCCGCTACAAGGGCCACAGGGAAGTGATGTACAGGGCGCCTTGCGGGCGGCGCCTGCGCAACATGCCCGAGCTACACAAGTACCTGCGGATACTGCAGAGCGATCTGTCCGTGGACCTGTTCGACTTCACGCCGGGTACACATTGCTTGGCCGAGTTTGTGCTGAATAAGTGTATTGTAGGGAAGAAGgaCCTCTCCCACGGAAAAGAAAATGTCCCAGTACCTTGCGTAAACTACTATGATGATTCGCTGCCGGAGTTCTGTTCTTATAACACGGAACGTACGCCCACTGCTGGGGTGCCGTTAAACATAGATCCAGAATTCCTGTGCGGATGCGACTGTACCGACGACTGCGTGGATAAATCGAAATGCGCTTGCTGGAAGATGACTCTGGAAGGTGCTAGAACAATCGGACTGGAGGGACCTAACGTGGGATATGAATATCGTCGGCTGCCGGAACCCCTGCCTTCCGGAATCTACGAGTGCAACTCTAGGTGCAAATGCAAACAGACATGTCTGAACAGGGTCGCTCAGCATCCGTTGCAGTTGAAACTGCAAGTATTCAAAACGGTCAATCGCGGCTGGGGTATTCGCGCACTGAACGATGTCCCTAAAGGATCATTCCTGTGCGTGTACGCAGGGAATCTACTCACAGATGCCACTGCCAACTTGGATGGTCTGAATGAAGGTGATGAGTATCTAGCGGAGTTGGACTACATAGAAGTGGTGGAAGGCATGAAAGAAGGCTACGAAGACGATATACCGGAAGCGGACAAGAAATTGGACAAGAAATCAAAGGGCCGCTCTTCCGAAAGCGAATCTGAACCGAGCTCGGAGTCCGAAGAGGAGAGGGAGGAAAGCACTAAAGACGACGACTTCCAACCGGGATACATACCGCAAAGCAATGTCACATTCAAgAAGAGTCTCCGCAAACGCGATAAGACCAAGAAGAAAGAAGAGAAAGAGAAACATAGAGAAGAAATGAAGAAGGGAGACAACTGCATCACCATCAGCGATGATGAAGAAGTGAGGGAGCCGTCGAGATTCACAGCGCAAGCTGGTATGGTCGACAAAGATCTCATACTGAAGCACAGttCGCGCGTGTCTGTCCGCACGCTGTTCGGCAAGGACGAGGCTTGCTATATCATGGATGCTAAGGTGCAGGGCAACATCGGACGGTATCTCAATCATTCGTGTCACCCCAACGTGTTCGTACAGAACGTGTTCGTGGACACGCACGATCCCCGTTTCCCGTGGGTAGCTTTCTTCGCTCTGTCCCACGTGAGAGCGGGGACTGAGCTCACGTGGAATTACAACTACGACATCGGCTCTGTGCCGGGGAAAGTGTTGTACTGTTACTGCGGGGCGCCTAACTGTAGGGGACGTCTTTTGTAA
- Protein Sequence
- MPICRIYRKTVALEIVNLQKEEISVVKLSAESAPASLPPCGEIVRPPLKNGMATYAMRNAFGTWLKGKIVEVQSKNAGQQFTQCRVKFEHKIKNPCKVLPARCLAYPEPCEVRMTIGTRVIALFKDPQNTARRDSFYSGVVAEIPNPVNNYRYLVFFDDGYAQYVHHQDTRIVCESSSLVWEEVHPFIRDFICNYLLSYPERPMVRLHAGEKLKTEWNGKWWDSKVLQVDASIALIHFDEDNRTEWIYRGSTRLAPLYLELQAAEKAGEGKTRSRLPRSKAQLRSNMPCVEYTRSDGQAATKPTAETQVQQQHNEELRRQRSVAKKSTTTTAQAPTVVQSPTPFEGVISRVVYYTPKNAVKPYKMSSHTCTIKCKRVDLLSLKELRTYNPLAKPLLSGWERQTVRYKGHREVMYRAPCGRRLRNMPELHKYLRILQSDLSVDLFDFTPGTHCLAEFVLNKCIVGKKDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNIDPEFLCGCDCTDDCVDKSKCACWKMTLEGARTIGLEGPNVGYEYRRLPEPLPSGIYECNSRCKCKQTCLNRVAQHPLQLKLQVFKTVNRGWGIRALNDVPKGSFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEGMKEGYEDDIPEADKKLDKKSKGRSSESESEPSSESEEEREESTKDDDFQPGYIPQSNVTFKKSLRKRDKTKKKEEKEKHREEMKKGDNCITISDDEEVREPSRFTAQAGMVDKDLILKHSSRVSVRTLFGKDEACYIMDAKVQGNIGRYLNHSCHPNVFVQNVFVDTHDPRFPWVAFFALSHVRAGTELTWNYNYDIGSVPGKVLYCYCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00632774;
- 90% Identity
- iTF_00663098;
- 80% Identity
- -