Paff011406.2
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- rfx3
- Assembly
- GCA_961405105.1
- Location
- OY560195.1:1933402-1955024[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.093 7.8e+02 1.2 0.0 3 17 203 217 202 223 0.85 2 10 0.093 7.8e+02 1.2 0.0 3 17 248 262 247 268 0.85 3 10 0.093 7.8e+02 1.2 0.0 3 17 293 307 292 313 0.85 4 10 0.093 7.8e+02 1.2 0.0 3 17 338 352 337 358 0.85 5 10 0.093 7.8e+02 1.2 0.0 3 17 383 397 382 403 0.85 6 10 0.093 7.8e+02 1.2 0.0 3 17 428 442 427 448 0.85 7 10 0.093 7.8e+02 1.2 0.0 3 17 473 487 472 493 0.85 8 10 0.093 7.8e+02 1.2 0.0 3 17 518 532 517 538 0.85 9 10 8.4e-37 7e-33 113.5 0.0 3 78 563 638 561 639 0.97 10 10 0.97 8.1e+03 -2.0 0.0 24 42 1005 1024 993 1028 0.77
Sequence Information
- Coding Sequence
- ATGTCCGAGATGGGGTTTGAAAATGTGTTCTACCTAGAGAATTTCGAGTGTGCCGGTGACGAGGTTCTGGTGGAGTCTTCGCCGCCCGCCTCTCCCGACATGGCGGCGCGGTTAGCGGCGCCCGCGCAGAGTAATGGCGCGGGCGGTGCGTCCCCCAGCGCGGTCCGTGACCTGATCGTGATCCCCGAGCTGCCGGATTCCATACATCTGCAGCACGCCATGCAGCAGGTGTCCAGCTCGGTGGTGGAAGTGAACGGCGTGAACGGTGACAGTTCGGGACAATCAAGCCCGAATGCCGAGCCTCAACACACCTTCATCACAGTCGCAAGCGAGGGTGGGAATGGAGTCAACTACCACGTGCAGTATGTCACCGAGCCGCAGGAGATATACGCGCAAGGACATCAGGCTATGGAGACGCTCCGCTCGTACCCGGTGTACGGCGTGGCGACGGTCGCCAACGGAACCGGCGAGACAGAGGCCGCGTGGGGCGGGGCCACCTCAGCCGACTACACCGCTTATGGCGTCGTGGTGGCAGGCGACGAGGCGTCAGCGCCGACGTCCCCCGCCACGCCGGCCGGCGTCCCGCAGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCACACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTAACGCATCAACATCCAGCGATGCACAGACGCACTCACCCCGACACACTCATCCACACACACCTACATACAGCCATACGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGCGTATCCCTTCCGCGTTCAACTCTCTACGCGCACTACCTCCGGCACTGCTCGATTCACCACCTCGAGCCGGTGAACGCGGCGTCTTTCGGGAAGCTTATCCGCTCGGTGTTTGTGGGACTGCGGACGAGACGGCTCGGGACCAGGGGGAACTCGAAATACCATTACTATGGGATCCGCGCCAAGCCGAATTCCGACCAGCATGCGCCCGATGCAAACGACAGCGCCGATGACAACGCGGACCTCAATGAAAAGGAGAGTGATCGTTCCCGCGAGCGCGAGGAAGGTCCGGGTTCGCCGCTGGGTGCCGCCTCCGTCGCCAACCGGCAGTACCTCGCGTCCGTCACGGCGCCGTCCCCGCCCGCGCTCGATCTCCCGATGTCGGACGACATCCCGCCCGGCGCCTTGCAGCTGCTGCGCCGACATCACCGCGATCACGGCGCCATGTTCCTGGAGGCGGTGGCTGCGCTGGACACGGGCGCCGTGGAGGCCGCGCGTCGCGCCTTCTGGAGGCGCAGCTCCCCTGAAGACAACACCCTGTGCCGACGCACGCTGGCAAGACTCTGCGCAAGGAAGGACGTCTGTCGCTGGCTTCGATCGGCCGACACGCAGCTCTACCAACGCGCCGTGGATATGCTACTGCCTGATGTATTGCGCCCGATTCCACCACAACTCACACAGGCAATCCGCAACTTCGCAAAGAGTGTGGAATGCGCCGTGTCGGCCGGGTCGGGCGGAGCGCCTCTACCGGCTATGCGTGCGCAGGCTCGGGCCGCAGCCGCTCTAGCCGGGGCACTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCGGCGCGAGCCGTGCTCACCAACCACCTCCAGATACACCAGGTATGTGACCGCTCTAGCCGGGGCACTGCGCCGCTACGGCTCGCGCAGGCGGCGCGAGCCGTGCTCACCAACCACCTCCAGATACAGCAGATGGTGTCGGACCTGAACCGCGTGGATTTCCGCGTGGTTCGCGAGCAAGCCTCCTGGGCCTGCGCCTGTCCCTCCGCCGCCGTGGCGCTCAAGCTCGAAGCAGACTTCAAGGCGACGCTGAACCGCGGCGCTACGCTGGAGCAGTGGGCGGGCTGGCTGGAGCGCTGCGTGAGCGGAGCCCTGGCGCCGCACGAGGGCCGCGCCGACTACGTGCCTCGCGCACGACGCCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAGCTCACACTCAGATCCGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGGCTTCTCTACGACGAGTACGTGTCCTACCTGATCGAGCGACGCGTCGCGACGCATCTCAACGCGCCGCCCATCGCCGTCATGCATCGCACGCAGgaggaagaagaagaagaaggtcAAGAAGAGAACCGCGTCGAGGGTCTGGAAGAGGATCAAGACTGGGACTGGGAGGATGAGGAAGAGGATGATGAACCGGAGAGCAAGAAAGCGAAGATCAGCTGTGAGTAG
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQSNGAGGASPSAVRDLIVIPELPDSIHLQHAMQQVSSSVVEVNGVNGDSSGQSSPNAEPQHTFITVASEGGNGVNYHVQYVTEPQEIYAQGHQAMETLRSYPVYGVATVANGTGETEAAWGGATSADYTAYGVVVAGDEASAPTSPATPAGVPQPPRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGNASTSSDAQTHSPRHTHPHTPTYSHTRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSIHHLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPNSDQHAPDANDSADDNADLNEKESDRSREREEGPGSPLGAASVANRQYLASVTAPSPPALDLPMSDDIPPGALQLLRRHHRDHGAMFLEAVAALDTGAVEAARRAFWRRSSPEDNTLCRRTLARLCARKDVCRWLRSADTQLYQRAVDMLLPDVLRPIPPQLTQAIRNFAKSVECAVSAGSGGAPLPAMRAQARAAAALAGALRRYTSLNHLAQAARAVLTNHLQIHQVCDRSSRGTAPLRLAQAARAVLTNHLQIQQMVSDLNRVDFRVVREQASWACACPSAAVALKLEADFKATLNRGATLEQWAGWLERCVSGALAPHEGRADYVPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVATHLNAPPIAVMHRTQEEEEEEGQEENRVEGLEEDQDWDWEDEEEDDEPESKKAKISCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -