Basic Information

Insect: Periphyllus acericola
Gene Symbol: -
Assembly: GCA_949715065.1
Location: OX454271.1:10329199-10335355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7 9.9e+02 1.1 2.5 1 10 250 259 250 261 0.90

2 9 2.4e-08 3.4e-06 27.7 0.9 1 23 285 307 285 307 0.98

3 9 1.8e-05 0.0026 18.7 2.2 1 23 313 335 313 335 0.98

4 9 3.5e-06 0.0005 20.9 0.5 1 20 341 360 341 361 0.95

5 9 8.5e-05 0.012 16.6 6.9 1 23 376 399 376 399 0.97

6 9 1.6e-06 0.00022 22.0 4.4 1 23 415 437 415 437 0.97

7 9 1.2e-06 0.00018 22.4 4.4 3 23 505 526 504 526 0.98

8 9 5.4e-07 7.6e-05 23.5 3.3 2 23 554 576 553 576 0.94

9 9 3.1e-05 0.0044 17.9 0.2 1 23 586 608 586 608 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7	9.9e+02	1.1	2.5	1	10	250	259	250	261	0.90
2	9	2.4e-08	3.4e-06	27.7	0.9	1	23	285	307	285	307	0.98
3	9	1.8e-05	0.0026	18.7	2.2	1	23	313	335	313	335	0.98
4	9	3.5e-06	0.0005	20.9	0.5	1	20	341	360	341	361	0.95
5	9	8.5e-05	0.012	16.6	6.9	1	23	376	399	376	399	0.97
6	9	1.6e-06	0.00022	22.0	4.4	1	23	415	437	415	437	0.97
7	9	1.2e-06	0.00018	22.4	4.4	3	23	505	526	504	526	0.98
8	9	5.4e-07	7.6e-05	23.5	3.3	2	23	554	576	553	576	0.94
9	9	3.1e-05	0.0044	17.9	0.2	1	23	586	608	586	608	0.98

Sequence Information

Coding Sequence: ATGGCGTACGACGACGAAGACGCTGACGGTCAATCGGCGACGTCGGTCAGCTGCCGGTTGTGCTGTACCCCTTCGGTGGCCGTCGGTCAACGGCACccgatcgccgccgccgccacggaCGACAAGAGCGGGACACGCCCCGGCGGCCGAGGACTACGCGATACCATCGTCAAGCACCTGCGAATACAGgtctcTGAAGATGATGGTTTATCCAAAATTGTTTGCACTAAATgcttaacattgttaaatgaatGGGATCAATTTTATGAGATATGctcaaaaaataacaatatgcaACTCAAGCCAATGTTGGACGCAGAAGacaaaAATGATGATGGTGACGAATCtgcaaataatttagttatagaCATTACGGATGAAGACGAAGAACAAAATCATAGCTATACAAGTACAGATAAAAATCAGATGAAAACACCAAAAAAATCATTTCTTGGGGAACCTTCACCAGAAGATTACGTATTGATGAAAGAAGAAACTTTCAATTTAGAACCaaaaaatggaCCAACTGGTGTTTTGGGTGATTATTtaatagaatacaataatagtaaaaagtTACCAAATGAAGTGAATAATGCAGACAAAGACATTGTTGATAATTTACGCATACGAAGAGAAGTGTTACCATCTATGTGGgatgtatttgaaaaaactattgaaaagcTAAAAtcagGAGAGTCGTGTACAACGTTAGTCACTCATAGACGTTATATAACTAACAAAGGAGCATTCCCTTGTTCATTGTGTGGAGAATGTTACGAATTTGATCAAGGTGTTAGTCGTGATGAAGAAGAACCACAACCACCAGTTGAAGTTGACATTCAACAACGTTTGTTTATTTGTCCTACATGTGGGAAGTCTTTCCCTCGTCGAAGCTCATGGAAACGTCACCAAATGACTCATGAAGATGTGAAACCTTATGTCTGTCGTATTTGCACCAGTGGGTTCAACCGCAAGGAACATTTGATGCGGCATATGTTATCACACAGTACTGTAAGACCATTCCCATGTGAGCGTTGTGGAAAACGGTTTATTCGCAAAGAGCATTTGGCTAGACACCTTTTGTGTATACCGAGTTGTTCTAATTCATCTGACATGCCAAGACCATTCTGTTGCGATATTTGTAAGCAGAGATTTGTACGTAAAGAACATTTGTTCAGACATAGGAAAAGAGCCCATGAACATGCGTTGGTGGTGGAAAACCAACAACTGGAAGAGAAACCATTTGTATGTTGGCAATGTGGTAAATGTTTCACTCGCTATGAACACCTACGTAAACATTTGGATATCCACAACGGTATTATTCCTTCTTCTTCTACGGCAATACTTCCTGAAGTGACTCTATCAGAAATAAAACCCGAAGATATGTCAATTGATATCAAGACAGAAATTGTATCTGAATCTGAAGGTGAATCCGAAGTACTTCCCCCAGTGAGTGTACTAGAACTCAATGAACAACAGCCTGAACAAGGAAGACCTAAACCTAGTACACTATGTACCATTTGCAAAAAGACATTTTCTCGTCGAAGTCACTTATTGCGTCATTTGAAACGCATTCACAAAGTAGAACCTGTGTTGACTAGGAGACGAGTAAACAAATCTGGTGATGAGAATGGTAACTCTATTGAAGATGCCAAATGGGAATGTCATACATGTGGAAAGACATTTTCCAGGCAAGCTCATCTTGAGAGACACGAAAAGAATTTGCATGGCGAAGAACGAATGTTACCGGCTCCTTATGAGTGTGTCTCTTGCGGCCAAGCATTTTTCGATAGCAATTTACTCAATCAGCACATGGCTACTCATGGAAACACAGTGACTGATAATTTTGTTTGGATGTGA
Protein Sequence: MAYDDEDADGQSATSVSCRLCCTPSVAVGQRHPIAAAATDDKSGTRPGGRGLRDTIVKHLRIQVSEDDGLSKIVCTKCLTLLNEWDQFYEICSKNNNMQLKPMLDAEDKNDDGDESANNLVIDITDEDEEQNHSYTSTDKNQMKTPKKSFLGEPSPEDYVLMKEETFNLEPKNGPTGVLGDYLIEYNNSKKLPNEVNNADKDIVDNLRIRREVLPSMWDVFEKTIEKLKSGESCTTLVTHRRYITNKGAFPCSLCGECYEFDQGVSRDEEEPQPPVEVDIQQRLFICPTCGKSFPRRSSWKRHQMTHEDVKPYVCRICTSGFNRKEHLMRHMLSHSTVRPFPCERCGKRFIRKEHLARHLLCIPSCSNSSDMPRPFCCDICKQRFVRKEHLFRHRKRAHEHALVVENQQLEEKPFVCWQCGKCFTRYEHLRKHLDIHNGIIPSSSTAILPEVTLSEIKPEDMSIDIKTEIVSESEGESEVLPPVSVLELNEQQPEQGRPKPSTLCTICKKTFSRRSHLLRHLKRIHKVEPVLTRRRVNKSGDENGNSIEDAKWECHTCGKTFSRQAHLERHEKNLHGEERMLPAPYECVSCGQAFFDSNLLNQHMATHGNTVTDNFVWM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00309001;
90% Identity: iTF_00184788;
80% Identity: -