Basic Information

Insect: Periphyllus acericola
Gene Symbol: rxraa
Assembly: GCA_949715065.1
Location: OX454264.1:66389553-66412988[-]

Transcription Factor Domain

TF Family: SF-like
Domain: zf-C4|SF-like
PFAM: AnimalTFDB
TF Group: Zinc-Coordinating Group
Description: The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.8e-45 4.3e-41 142.3 0.1 182 408 202 425 153 427 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.8e-45	4.3e-41	142.3	0.1	182	408	202	425	153	427	0.87

Sequence Information

Coding Sequence: atgttcaaaaaagaaaaacccaTGATGTCGGTGTCTGCCATCATACAGAGCAGAGCGTCGCACCACTGGAGTAGAGgtTTACGATTGGACAATAATTTATCTCTGAGTTCGATGGGTCCTCAGTCACCTTTAGATCTAAAACCTGACACGGCGAGTTTAATGGTTAATTTCAGCCCTCCAGGAGATCCTCTAAGCCCTGGACTCTACAGCGTGGACAGGagcaataatatgatgaataatCCTTGCAACGTTCAAGATTCTCCAAATTACCCACCCAACCATCCTCTTAGCGGGTCGAAACATCTGTGTTCAATTTGTGGCGATCGCGCCAGTGGAAAACATTACGGGGTCTACAGCTGCGAAGGCTGCAAAGGGTTTTTCAAACGGACGGTGAGGAAAAATTTGTCTTACGCGTGTCGCGAAGAGAACAAGTGCATTATCGATAAACGACAGAGAAACCGGTGTCAGTACTGCAgatatcaaaaatgtttgacCATGGGCATGAAAAGAGAAGCCGTACagGAGGAGAGACAGCGAACCAAAGAACGTGACCACAACATCGAAGTCGAGCCGACGAGCAGTTCCAACACCACCGACATGCCAGTCGAACTCATATTGAGGGCCGAGAACAAAGCGGACGCTATAAAGACTGAACAGCAGTACATTGAGTTACAAcaCCCTCAGCACACCGTTGGTGCTATTTGCCAAGCAACCGACAAGCAGTTAATACAGTTGGTCGAGTGGGCCAAGCATATACCGCATTTCAAGAATTTACCTCTGGGCGACCAAGTTTTATTACTGAGAGCCGGTTGGAACGAGTTAATGATTGCAGCATTTTCCCACAGATCCATTAACGTGAAAGACGGTATTGTCTTAGCAACTGGACTCACCGTTGACAGAGATTCCGCTCATCAAGCTGGCGTTGAAGCCATATTCGATCGTGTACTCACCGAACTTGTTGCCAAAATGAAAGATATGAATATGGACAGAACAGAGCTCGGTTGTCTACGTACTATTATTCTGTTCAATCCAGgttCCAAAGGATTGCAGTCTGTAAATGAAGTGGAAGTGTTGCGTGACAAAGTTTATGTTGCTTTAGAAGAATATTGTCGTGTAACTCATCCAGACGAACCCGGTAGATTTGCAAAATTACTTCTACGGCTGCCTTCATTGCGTTCTATTGGTTTGAAATGTCTAGAACATTTATTCTTTTACAAACTCATTGGAGATTCTccaattgatacatttttaatggaaGTTCTTGAATCATCACATGATGTGCAAGTTGCCACATGA
Protein Sequence: MFKKEKPMMSVSAIIQSRASHHWSRGLRLDNNLSLSSMGPQSPLDLKPDTASLMVNFSPPGDPLSPGLYSVDRSNNMMNNPCNVQDSPNYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKNLSYACREENKCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKERDHNIEVEPTSSSNTTDMPVELILRAENKADAIKTEQQYIELQHPQHTVGAICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSINVKDGIVLATGLTVDRDSAHQAGVEAIFDRVLTELVAKMKDMNMDRTELGCLRTIILFNPGSKGLQSVNEVEVLRDKVYVALEEYCRVTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPIDTFLMEVLESSHDVQVAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00670337;
90% Identity: iTF_00469025;
80% Identity: iTF_01169966; iTF_01169880; iTF_01169885;