Pace021522.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- bab2
- Assembly
- GCA_949715065.1
- Location
- OX454271.1:17534380-17538957[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-12 2e-08 34.3 0.0 2 38 417 454 416 459 0.89 2 4 1.9e-12 7.3e-09 35.8 0.1 2 39 471 508 470 511 0.94 3 4 1.3e-16 4.8e-13 49.1 0.0 3 45 527 570 525 570 0.97 4 4 2.2e-17 8.6e-14 51.5 0.1 1 43 577 620 577 622 0.96
Sequence Information
- Coding Sequence
- ATGACCGTAAATGGCCAACATTACTGTCTCCGCTGGAATAATTACCAATCAAACATGACGTCTGTATTTCATCAACTTCTTCGAAATGAATCATTTGTTGATGTCACACTTGCCTGCAACGAGAGCACATTAAAAGCTCACAAAGTAGTCTTATCAGCTTGTTCCTCATACTTTCAGAAACTCCTAATGGATAACCCATGCAAACACCCTACGATCATATTGCCctatgatatttgttttaatgatcTTAAGTTTATCATTGAGTTTGTCTATAGAGGTGAAATTGATGTGTCACAAGCTGAATTACAGTCGCTTCTAAAGACAGCTGACCAGTTGAAAATAAAAGGATTGTGTGAAGTGCCTGAAGATGAACGTGATACATCTATTGTTGCTGAAGTTACTCCTTTAGGACCATTGAAAAGTGGAGGGCGAGTTTTCACTAAATTACAACGCAGGACTTCAccttattcaaaaaaaatgagTCCAAATAATATGCAGCATGATCAATACAATCGTAGTTATTATCGAATTGAACAATCTGGATTCGCACCCATGAATGTTGACCAGGAGAACAAATCTATgagtTCTATCCATTGCATGACTGTAGCTACATCAACTGAAGATGACGAAAAAGATATGAAATCAACTCTTACTGATTTACCAGTTGTAATTTTAGAACCACATTCTACATTAAATTTACAGACCCAACAACAACCCCAGATAGTTCATATACCTATACCACAACAACAACTGAACCATATAACTCAACACCCAAACCAACCTCAGTTACAGCAAGCTGCTGTTCAAACTCATtcacaaatgATCATCACAAACGGTCCAGTTATGACAGTCAATGAAGCTGATATAACTCCTGACATACAACCTGTTGGGCCTCGAGCAACACCAGtatcagtaaaaaataattctagtcCCTCTTCAACCCCTACCCATAGAGATATGGCTGTTGGTACCTCATGTTCAAATGATGTGAGTGaagtaaaatttgaaaataccaaATTTGAAACACTTCGTACTATTGATCAATCATCAGATGCAATTGGAATAGAAAGACAACATTCTAGTGAtcataatataaatgaTGAAGATAATTCAATGCATACCATGATGATAACACCTGAGCTTTTAGGATTGTTACCAAATTCGTCTAGTACAGGAGataTCAGCGAAGATGGTTCAAGtcataatataaacaaacattatgGTACAAATGGTGGCAAAGGATGGACAGCTGATGATATGGAGAATGCTTTAGAAGCATTACGTTCTCATAACATGTCTTTGACCAAGGCATCTATTACTTTTGGAATCCCTTCTACAACATTATGGCAGCGAGCTCATCGAGCTGGTATAGACACTCCTAAAAAAGATGGACCGGCTAAATCTTGGAATGATGAAGCTTTGAATATTGCTTTAGATGCTTTACGCACTGGTTCAATTTCAGCAAATAAAGCTAGTAAAGCATATGGCATACCCAGTAGTACTTTATATAAGATTGCAAGGCGGGAAGGTATTCGTTTGGCTGCTCCGTTCAATGCCGCACCAACATCTTGGGGCCAGGAGCAGTTAGAACAGGCATTGCATGCGATACGAACTGGGCAAACAACTGTCCAACGAGCTGCAGCGGATTATGGAATACCTTCTGGTACATTATATGGACGATGTAAAcgtgaaaaaattgaattgtctCGAAGCAATCCAACACCATGGTCTGAGGATGCAATGATGGAAGCTTTGGAGTCTGTACGTTTAGGACATATGAGTATTAATCAGGCggctatacattataatctgcCATATTCTTCATTGTATGGTCGTTTTAAAAGAGTGAAATATGGAGCTGGACATCCAGATGACGATTGTGATGATATGATTGATTCAGACACCCAAGGCGAACAACAGCATatgcaacaacaacagcagcaacaacaacagcagcaacagcaacaacaacaacaacaacaacagcagcagcagcagcagcaacaacaacagcagcagcagcaacaacaacaacagcctCCGCCTAATCAGCAAGTTCAGGCTAGTCCCGTGTCTCAGATCATGTTGGTACAATATCCAGCTCCACAAATTCAAATGTACCAGCAACATCCAACTCATTCAACAACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDICFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKMSPNNMQHDQYNRSYYRIEQSGFAPMNVDQENKSMSSIHCMTVATSTEDDEKDMKSTLTDLPVVILEPHSTLNLQTQQQPQIVHIPIPQQQLNHITQHPNQPQLQQAAVQTHSQMIITNGPVMTVNEADITPDIQPVGPRATPVSVKNNSSPSSTPTHRDMAVGTSCSNDVSEVKFENTKFETLRTIDQSSDAIGIERQHSSDHNINDEDNSMHTMMITPELLGLLPNSSSTGDISEDGSSHNINKHYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLEQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQGEQQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPPPNQQVQASPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01169999;