Pmec008698.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- L
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000004.1:831352-856285[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 9.3e-06 0.0016 19.9 1.5 1 23 154 176 154 176 0.98 2 20 0.53 91 4.9 3.9 1 23 182 204 182 204 0.97 3 20 1.1e-06 0.0002 22.8 4.3 1 23 210 232 210 232 0.99 4 20 0.00025 0.043 15.4 0.2 1 23 238 260 238 260 0.99 5 20 0.0003 0.053 15.1 0.6 1 23 415 438 415 438 0.95 6 20 0.47 81 5.1 0.0 2 23 449 471 448 471 0.88 7 20 0.23 40 6.1 0.1 3 23 535 555 534 555 0.97 8 20 0.015 2.6 9.8 0.3 1 23 567 589 567 589 0.96 9 20 0.0067 1.2 10.9 0.4 1 23 598 621 598 621 0.93 10 20 4.1 7.2e+02 2.1 0.2 1 23 626 649 626 649 0.91 11 20 0.25 44 6.0 2.0 2 23 723 744 723 744 0.96 12 20 0.0057 1 11.1 0.1 1 23 749 772 749 773 0.94 13 20 3.5 6.1e+02 2.4 0.1 2 23 830 853 829 853 0.82 14 20 0.00023 0.039 15.5 1.0 2 23 869 891 868 891 0.96 15 20 0.046 8 8.3 1.0 1 23 900 923 900 923 0.93 16 20 0.0019 0.33 12.6 0.1 2 23 1113 1135 1112 1135 0.96 17 20 0.082 14 7.5 0.3 1 23 1145 1168 1145 1168 0.96 18 20 1.4 2.5e+02 3.6 0.4 2 23 1181 1202 1180 1202 0.94 19 20 0.53 91 4.9 0.1 2 23 1211 1233 1210 1233 0.93 20 20 0.12 20 7.0 3.0 1 23 1240 1263 1240 1263 0.97
Sequence Information
- Coding Sequence
- ATGcatgaattatataaaatacatctTAATTTGTTGTTAAAGGAACATACAGAATGGGACAGTAGTCTCAACGAAAGGCTGGTCCCGCGGATAAAAAGGGTACCAGAACCCGATCTGGGAATATGCCCCGTGCGCGTCTCCTTTTCTCTATCCGCGCTGCCAGCTATCCGACCGCCGAGGATCTCGAAGGAGCTCCTGTTGACGAAGCACCGCGGGTTAATGGTACCAGTTTCACCGCGTGCTTGTTACGAAAACAATATAAAGGGACATGTAACGGGGCGAGAGGCTTTGGGTACCGGAAGTTCGTCCTGGCACAGCGAGGATGGCGGTCCAAACTCGCGTCGCGGCGGAGAGACGCCGTCGTCTTGCGCGACGCCGACGTCGGCCAGCTTCCCGTCGGAGCCCGAGGTGGATGCTGACGTCGGTGTCACCGCCGACGGAAACAACGCCAGCGCGCCTTATCCTTGTCAATTTTGCGACCGTACCTTTCCACGATTGAGCTACCTGAAGAAGCATGAACAGAGCCACGGCGATCAGATGCCGTATCGATGCAGCTGGTGCGCCAGACTGTTCAAACATAAACGCAGCCGAGATCGACACGTGAAGCTTCACACGGGAGATCGGAGATACCGATGCACGCACTGCGAGGCTGCTTTCTCCCGGAGCGACCACCTGAAGATCCACATGAAGACCCACGACACGCAGAAGCCGTACCAGTGCACGGCCTGTTCGAGGGGTTACAACACGGCGGCAGCGTTAACATCTCACATGCAGTCCCACAAGAAGCACCAATCCCATGCGACGAACAAGCTACAAGATGTGGACTACGGACGAAGAAGCGTCTCATCGCATAGCACATCGTCGCCGCCTGTCCCAAGCTCCCCGTCGCCATCCTTGAATCTCAGCCTGAACCCAAAGTCTGGGCTCAAGGGATCGCAGGGTAGCGCCTCGACCACGCCGATCCTAAGTTCACCCCTGAAGCTCGCTTGCATGTACTGCACCAGGGACTCGTTCAGCTGCATGCAGCAACTGCAGATGCACGTGCACACGATGCATCAGGCGATCCTGAGCGGTGAAGCCGTGACTGTCCCACCGTCGCCCAGCAGGAGCAACGAGCAGGTTGGCTACCAACGCGAGAAAACCCTGGATCGGCAAGAGGGATTGATCTCGAAGGATCACCACGAGAGGAAATACCAGGAGGAATCGGAGAGGTCAGCGGAGAAGGAGCAGTTTGAGAACGCGTTCACCTGCAACCAGTGCACGATGAAGTTCTCCACGTTGGGCTCGCTGAGGGACCACCTGGTCTCCATTCATAGAACAGACAGCTTCGGGTCTGCGTTGATGATGTGTCCCCTTTGCGGCATCCCCTGCGCCTCGGCGGCTGCCTACGCGGAGCACTACGTCCTCCAGCACTGTGAGAACCGGAGGATAGGACCCCTGGAGGGTCGAGAGTACGCGGACGCGAAGATGAACGGGAGCTACGGAGACTCGAAGAGCTCCAGGAACCAAAAAGCCGTGGAACAGTCGCTGTCCGAGCCTGCTGATCTCACGAGCAAGCATTCCAGGTCGACCGACGCAGGCTACACCGCCGGGACTCTGCTCTGCGGACAGTGTGGCGCCGCTTTGAAGGACTTCGAATCGTTCAGGGAGCACCTCGCTAGGCATCTCCAAGCCGACTACCGAAACGACGCGATGAGACACCCGTGTCCAAAGTGCGAGGCCACCTTCCAAGACCGCGAGGGCATGCTGGTACACCTGACCAAGCACTACCTCGGACAGATCAGCAAGGAGTACGCGTGCGGGTCCTGCAAGAAGCTGTACCCTCATCCTGACCTCCTGCAGAGACACCTGCTCGACAGCCACGCCCATCATCTCTACAGGTGCGCCCTGTGCAGGGACACTTTCGACTCTAGGGTGGCGATCCAGGTCCACTTCGCCGTGAAGCACAGCACGGAATGCAGGATCTATCGCTGCAATGCGTGCATGGTGCCCAATAACGAGAACTCACCAGGAAATGCGCCTGGGGAAGGGAGGAGCTTCTTCAGGAGCGAGGCCGAGATGGCGAACCACGTCAGAAGCGTCCACGCACCACCCGTTGTGTCAAACAACAGTCCTGTCGCGAGAAGTCCTGCATCCACTCCGGGTGTAACAGGCAACTCGGGACCAAGATGCGTTTTCTGCGGGATCTGCTGCAACTCGGAGCTCGAGCTGCAGCTTCACCTGGCTAGCCACTCGAGCAATCTGTATAGATGCCCCATTTGCAGGGAGGGTTTCGCTGTTGAGTTCTTGCTCGATAGGCATATTGCCCAGGCGCACCATTCCAGTGATCAGGCTAGAGAGAATGGACGGATTGGGAGACCACCTAGATCACAAGAAGAGTCAAAGTCGCAGAAAAGAGGCCGATCCCCAGCATCCAGCAACAATAACTCGCTGAACCAGCGGGACAACAACAACAAACGACCAAACTACACGACCGCAGGTGCCCAGCAATGCGAACTGTGTGAACGGGGTGAGTTCGCAACCGAAGCAGAACTTCAGGCTCACAAGAAGCTGGTACACACACCTGCGAAGCCTCAGAATAAGTCCCTGTCGAGCCTCAGTATGACGTGCGCGTACTGCGGGGAGGTGTGTCGCTCTAGGACTGAGTTGGAGTCCCACACCAGAATCCAGCACGCGTCGAACGAACCTGGCGGACGTCACAAGTGCAACATCTGCGACGAGGTGTGCCCTTCTGGAGCCACTCTAGCTGAACACAAGTTGCAGAAGCACTGCAAGATTCAATTGAGCGACATCTGCATCGTCTGCCGTGGGAGCATGACGTCCGAGTCTCAGTTCCTCGAACACGTGCAAAGACACAGTCTGGAGAACGTGGACCCACAGCAGAGGCTGGACGGTTCCCTTCCTCACCTCCCAGCCGCGTGTGTCGTTTGCAGGCAAACGTTGATCAGCGATCTAGAGTGTCGCCTTCACGCGAGGCATCACCTCCGAGCCTCGACGGGCTCCAGAAGCGCCGGGTCCAGTCCCAGCCCCAACCGGAAGAGCCAGAACCCGGGCTGCTGCCTTTGTCTCAGGGATTACTCTGTTGACGACTTCGTCAGCCTGCCTCCCAACCATATCAGCGGCGGGGGACAGAGTCTCAGAGTCTGCAAATCCTGCTACATCCGCCATTCTCAGGGTCTGCCCATCTTGAACTCTCCTTACGAGCCTGCCAGAGTGAAATCCGACAGGGGATGGACGGGAAGCAAGGACTCTCAGTGGGACGGGTCCAGCGACAGGTGGGACTCCGAGCGTACGTTCAAAACGGAGGACAGGGGGAACGAAGTGAGCGATAACAAAAGGTGCCAGGACTGCGGGGTGAAGTTCGAAGATCCTGAAGAAGCGGAGAAACATAGGATCACGGAGCATGAAAACGTTGGGTCTGGGTCAAATACGTACACGTGCATACAGTGTCAGATGTCATTCCCAACGGAAGCTAAAATACAACAGCATGTAAGGAAGGAACATCTGGAGGGATCAGGTAAAGCTTCTATCGAGGCACTACGATGTCACTTGTGCCTCTTCGAAGCTACCAGCCCATTGCAGCTGCAGAGTCACTTGATAGAGCATACTTTCGCTGGGTGCGCTGCTCTTAGCTGCTACATTTGCCAGTCCCTGTTCACTGCACCAATCGGCCTTCAGAATCATATGCTGCAAGAACACGGTCTCGGCGCTCGTCCTTATGACTGTTCCAAGTGCACTCTCAAGTTTTTCTTCAGAGCGGAACTGGATCATCATGTGCTAACGTTCCATCGTTCGGGAGAAGCAATCTCTCCTACTGAGAACGTTCAAAACTCTGTCGAGGCTACATCGAGGGAAACAAAACATCAGAATGTCGAGGAAGAGAGTGTCATCGTCAAGGAAGAAATGCTGCCTGACGCTGGGGACGAGGAGGAAGAGATCAACGTTGATGAGCAAGTGGAACAGGACGACCGAAAGTCAGACGAGCGGATAGAAACGGAGCACGAGCTGAAAGTTGAAATGGAGGAAGAATCGGTCGCCGAAAAAACAGAATCGTGA
- Protein Sequence
- MHELYKIHLNLLLKEHTEWDSSLNERLVPRIKRVPEPDLGICPVRVSFSLSALPAIRPPRISKELLLTKHRGLMVPVSPRACYENNIKGHVTGREALGTGSSSWHSEDGGPNSRRGGETPSSCATPTSASFPSEPEVDADVGVTADGNNASAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCTHCEAAFSRSDHLKIHMKTHDTQKPYQCTACSRGYNTAAALTSHMQSHKKHQSHATNKLQDVDYGRRSVSSHSTSSPPVPSSPSPSLNLSLNPKSGLKGSQGSASTTPILSSPLKLACMYCTRDSFSCMQQLQMHVHTMHQAILSGEAVTVPPSPSRSNEQVGYQREKTLDRQEGLISKDHHERKYQEESERSAEKEQFENAFTCNQCTMKFSTLGSLRDHLVSIHRTDSFGSALMMCPLCGIPCASAAAYAEHYVLQHCENRRIGPLEGREYADAKMNGSYGDSKSSRNQKAVEQSLSEPADLTSKHSRSTDAGYTAGTLLCGQCGAALKDFESFREHLARHLQADYRNDAMRHPCPKCEATFQDREGMLVHLTKHYLGQISKEYACGSCKKLYPHPDLLQRHLLDSHAHHLYRCALCRDTFDSRVAIQVHFAVKHSTECRIYRCNACMVPNNENSPGNAPGEGRSFFRSEAEMANHVRSVHAPPVVSNNSPVARSPASTPGVTGNSGPRCVFCGICCNSELELQLHLASHSSNLYRCPICREGFAVEFLLDRHIAQAHHSSDQARENGRIGRPPRSQEESKSQKRGRSPASSNNNSLNQRDNNNKRPNYTTAGAQQCELCERGEFATEAELQAHKKLVHTPAKPQNKSLSSLSMTCAYCGEVCRSRTELESHTRIQHASNEPGGRHKCNICDEVCPSGATLAEHKLQKHCKIQLSDICIVCRGSMTSESQFLEHVQRHSLENVDPQQRLDGSLPHLPAACVVCRQTLISDLECRLHARHHLRASTGSRSAGSSPSPNRKSQNPGCCLCLRDYSVDDFVSLPPNHISGGGQSLRVCKSCYIRHSQGLPILNSPYEPARVKSDRGWTGSKDSQWDGSSDRWDSERTFKTEDRGNEVSDNKRCQDCGVKFEDPEEAEKHRITEHENVGSGSNTYTCIQCQMSFPTEAKIQQHVRKEHLEGSGKASIEALRCHLCLFEATSPLQLQSHLIEHTFAGCAALSCYICQSLFTAPIGLQNHMLQEHGLGARPYDCSKCTLKFFFRAELDHHVLTFHRSGEAISPTENVQNSVEATSRETKHQNVEEESVIVKEEMLPDAGDEEEEINVDEQVEQDDRKSDERIETEHELKVEMEEESVAEKTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684951;
- 90% Identity
- -
- 80% Identity
- -