Pmec025532.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000011.1:7572060-7575243[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 1.7 10.4 0.1 2 23 485 508 484 508 0.94 2 10 0.0072 1.3 10.8 0.9 1 23 514 538 514 538 0.98 3 10 0.00022 0.038 15.6 0.2 1 23 544 568 544 568 0.97 4 10 0.0013 0.23 13.1 0.3 3 23 576 598 575 598 0.91 5 10 0.0045 0.78 11.5 3.9 1 21 605 627 605 629 0.95 6 10 0.00023 0.04 15.5 0.5 2 23 637 660 636 660 0.95 7 10 3.2e-05 0.0056 18.2 1.8 1 23 666 690 666 690 0.93 8 10 4.8e-05 0.0084 17.6 0.6 1 23 696 720 696 720 0.95 9 10 0.00011 0.019 16.6 1.0 1 23 726 748 726 748 0.99 10 10 4.9e-05 0.0086 17.6 1.1 1 23 836 861 836 861 0.96
Sequence Information
- Coding Sequence
- ATGTCTCGTAAAGGAACTCCCTCCGCTTGCAAGTCAAAACAAATCCCGCGAATCTTTCGTAATAGACGCGTTTTGTGCTCGGGCCGCGGCTGGTCGCACGGCGAGGTCGGCGTCGCGGCTGGCTTGCCGATAGGTTACACGGGATCGTCGTGTCTGTCGGTCATCGCGCCGGACGTGGACAAAAGCGAGGAGTcgaggaaaaaaggaaaacacgAATCGAGGCGCGACGAGGAGGAGGCGTCCGCGCGTACCGCGACGACCGTCTGGTCGGAGTGCGGCGAGGGGGTGACGAACGGCGACGTAGCGGCGAACGACGAGCCGTGCGACGACGCGATCGGTAAATCCGCCGATGTCGAGACGGTAGTGGACATCGAGAAATGGTTGAAGACGCGCACCGAGTCCGTGTCGAGCATGGATCTCGACGCGATCAAGTCCGGGGTCGAGGAGGGCGTCGACCGGTACCTGGGCGAGGAGCTCCAGCACGCTTTCCTGGAAAAGGACCCTGACGGCCTCTCGATCGACATCGATCTGTCCGATAAGAAGCTTAACTTGGGCTACGACCCTCTGCTGCAGGAACTGCAGACGGAGAAGCTGCTGGATCCCTGTGAAAAGGACGGCTTCATACTGCCGGAGTTTCAGCTGGATCATCTAGACCCGTTGGCGTTGTCACCGGATGACATGATGGTCGCTGGCGAGATCTTGCCGTCGACCAGCGCTCAACCCGCTCTGAGCGTCCCGAATACGGACGACGGGATCTGCGTGGAGGCAGAGCAGGCGTCGCTGATGACGAAAGGCTTGATCGAGAACCACGAACCGCACTGCGAGTCTACTCCAGTCGCCGTAGACGAGTTAGAAGTTCTGGCGAATGACAAGGAACAAAATGCTCAACAGCAGGACGATTGTCATTCGCCGGACGCTGCTGCGAATCTCTATATGCAGGATCTCAGTGCTGAGAATGTGATAGAAGAGCTGCCCGGCGTGAAGCTCGCCGATGGCAACTCTGAGAATATTATTATAGAGCAATTAAAGACTAAGGCGAAAGTTAAGTTAGAACCGAggattattaaaaaacgtaGGAAAGTATCGGGAATTGTAGAAAAGAAGCTGGACAACGAAATTAAGATTTCCGATGACGTTGTGGATGCGGAGGACGGTGTGATGGCGGTCGTAGCAATATCCACggataaaatttcaaacatgaCGCAGATCGTCATAAACACTGGTACAGGGGAGCAGATCTACCAAGGGAAAACTTCGGAGCTCATCGAAGCTACTGGAAACTTTCCAAAGTTGCCAAAAATAGAAACCTCGACCGCGTGGAACGGCGCAATGGAACAGAGCGCCGAGAGCCTGACTAATCACGAGGTGGTGATATCCGACGCTTTAGAGGAATTAGGCATTACGGACGATAATCTGCAGCCGATATCGATTAACGAACACGGGAAGGTATGGGTCTGTCCGCGCGAAGACTGTAGTAGACAATTTAGCAAGCTTTACGCTTTGAAAGGTCATTTGTTGGCACATTACGGTGTGAGACCCTTCAAGtgtGATTTCGAAGGATGTGCCTGGGCATTTTATTCCGAATTCAAGCTCAAGAGGCACAAGGAGACCCACTTGAAACGCAAAGACTACGTCTGCGAAGTAGAGGGTTGCAACCGAAGATTTACGACGATTTACAATTTATGGAGCCACGCGAAACTCCACAGTCGCCCAAATAGAATATTGTGTCAAGTGCCAGACTGCCAAGAGAAGTTTCAAACGAAACGCGCTCTGGAATTGCACATGAAATCGCACGACCAGAGTCACGCGCCGTACGTTTGCAAGCACGAGGGATGCGGGAAGAGATATTATAGTAGTAATGCGTTGACGTCGCATCAGCGATGCCATAGTTATAAGGAAATAGATGTAAAATGCTCGTGGCCAGGCTGCGGGAAGATATTTGACAAGCCGTGCAGGCTGAAAGCACACATACGTTCGCACACTGGCTGCAAGCCCTACCTTTGCACGTTTCAAGGCTGCCAGTGGGCTTTCTCGTCTTCTAGCAAATTGAAGCGGCACCAAAAGAAGCACACGAACGAACGGAAATTCGTGTGCGACATTCCCTCATGCGGGAAAGCGTTCATGAGGTCGGAACACCTCAAGGAGCATCGGTTGACGCATAAGGACGGACGTTACTTTCAATGTTTCATATGTAACGCGAACTTTTCCGCGAAAAGCAGTTTGTACGTTCACATAAAGAAGCATCAGCTTAAGGGGAACGCGGAAGCGAGTCCGCGGGACGCGATCAACGGTCAGAAACGTGGCAAAGTGAAAGAGACGCAATGTTCCAGGGTGAATCCGGTTGTGAAGTCGAAGAGAAAATCGGGGGAACCGAACGCGAACGCGACTTGCCTGAATTCGTTTGAAATCGTGGAGCCCGAGCTGAACGATGCGAATCTCGCGAATAATAACGAGGATCGGGTGAAATGCGATACGGTGTCGCCGCACGATCAACCCAAGACTTTGTATCATTGTCCGGTGGAAACTTGCACGCGTTCGTACACAACCAAGGCCACGCTGAGAGCGCACATGTTGAAGGTGCACGGCACGCCTGTCGAGGACGGCGACAAGTCCTCGATAAGAGTGTCGGAAGCCTCGATCTGCAACATGGACTACATTTTGTACACCGCGCCTTCGGTGTCCGAGACGACGGAGCAAATGATTATGGTCGCGCCGTGCGACGCCGTTATTCTCAGCACCACTCCGGAAACGGATCGCTCTCCGCCGGAACCGGAACCGCCGCCTCTCAATGTTCTGAAAAGTTCGGAACCGTCTACGCATAATACAATCCAACGACAGTTACCTGATCAACAGCCGAGGAAGGATCAGGGCTCGGCGCGAACTGATTTGACGTTGTCCGACGTGCGGAAGCTGAAGGTGAACGGTGCTGTGTTAGATTCCGTTGTCGGAGCGTCCGACGTTCTCGGCGCGAATGATCTGCAAGAAGGTTTACTGCTCACGGAAGAATTGCCTTCCATGTACTATCAAGACGACGTAGTCGGCACTGAATATCAGGTACTATTGCTCGACTCGGTACCGCCTGAAAGTACCATAAACCTGCGAGGACTCGAATAA
- Protein Sequence
- MSRKGTPSACKSKQIPRIFRNRRVLCSGRGWSHGEVGVAAGLPIGYTGSSCLSVIAPDVDKSEESRKKGKHESRRDEEEASARTATTVWSECGEGVTNGDVAANDEPCDDAIGKSADVETVVDIEKWLKTRTESVSSMDLDAIKSGVEEGVDRYLGEELQHAFLEKDPDGLSIDIDLSDKKLNLGYDPLLQELQTEKLLDPCEKDGFILPEFQLDHLDPLALSPDDMMVAGEILPSTSAQPALSVPNTDDGICVEAEQASLMTKGLIENHEPHCESTPVAVDELEVLANDKEQNAQQQDDCHSPDAAANLYMQDLSAENVIEELPGVKLADGNSENIIIEQLKTKAKVKLEPRIIKKRRKVSGIVEKKLDNEIKISDDVVDAEDGVMAVVAISTDKISNMTQIVINTGTGEQIYQGKTSELIEATGNFPKLPKIETSTAWNGAMEQSAESLTNHEVVISDALEELGITDDNLQPISINEHGKVWVCPREDCSRQFSKLYALKGHLLAHYGVRPFKCDFEGCAWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTIYNLWSHAKLHSRPNRILCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSHQRCHSYKEIDVKCSWPGCGKIFDKPCRLKAHIRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFVCDIPSCGKAFMRSEHLKEHRLTHKDGRYFQCFICNANFSAKSSLYVHIKKHQLKGNAEASPRDAINGQKRGKVKETQCSRVNPVVKSKRKSGEPNANATCLNSFEIVEPELNDANLANNNEDRVKCDTVSPHDQPKTLYHCPVETCTRSYTTKATLRAHMLKVHGTPVEDGDKSSIRVSEASICNMDYILYTAPSVSETTEQMIMVAPCDAVILSTTPETDRSPPEPEPPPLNVLKSSEPSTHNTIQRQLPDQQPRKDQGSARTDLTLSDVRKLKVNGAVLDSVVGASDVLGANDLQEGLLLTEELPSMYYQDDVVGTEYQVLLLDSVPPESTINLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761152;
- 90% Identity
- -
- 80% Identity
- -