Pmec024899.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000011.1:703823-707879[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0038 0.67 11.7 1.2 2 23 288 309 287 309 0.95 2 10 6.8e-05 0.012 17.2 3.3 1 23 362 384 362 384 0.97 3 10 0.023 4 9.2 0.2 7 23 438 454 438 454 0.94 4 10 8e-05 0.014 17.0 0.9 1 23 459 482 459 482 0.96 5 10 0.00012 0.021 16.4 0.2 1 23 519 541 519 541 0.98 6 10 3.1e-06 0.00054 21.4 3.3 1 23 551 573 551 573 0.97 7 10 4.1e-06 0.00072 21.0 0.7 1 23 579 601 579 601 0.99 8 10 8.6e-06 0.0015 20.0 0.2 1 23 607 629 607 629 0.98 9 10 7e-05 0.012 17.1 5.8 1 23 635 657 635 657 0.98 10 10 0.00041 0.071 14.7 0.4 1 21 663 683 663 684 0.94
Sequence Information
- Coding Sequence
- ATGGATGTTTCAAAAAACGATCAGTTAGTTGATCCGTATGATAAAATTTACGGTGACGAAtgtcgaatttgtttaaagagaGCTGTTGAAATTTGTGAACTGTTCCGAAATGGGGACGCTATTTCACACAAACTTATGGCTGTTGCTTCCGTACAGGTGGAAGAAGGAGATGGATTACCACCAGTGATATGTTTGCCTTGTAATCAACGCTTGGACGCAtcttacaatttcaaatgTCAAATACGAAATTCGGATGAGAAACTTCGTCAggtgttaaaattaaaatcttctgGCAACATAGTCAGTAGCACCAGCATAGTCAGTGCGATAATTACGGACGTGATATCCAGTGTAATATCCTCTGAAAAGGAGAACACACAGAAGGAAGAAGTTTGCCCTGGAAACTTCTGCCCcgataatttttgtttctcaaAAGACGACGCCTCTTATTGCTTGAACTCAGACAAAAGCTTGTTCTATTACGAAAGAGAGTCGCACAATCAATTAAACAATGTAGAACAAAAAAAAGGTGCAGAAAATGTGGATGTTTATAGAAATCTATTAGAAGTGCCAGCGAGACAAATTGATTCGATTAAACAAGAAGACGAAGAATTGGTCCTGTTTCATGAACACATAGaacaaaatacagtagaaactCCTATGAGAGAAATCACGTCTgtgaaagaagaagaattgtctttgttccacgaaagcGTGGAAGAAAATAAAGGGTCTTCGTCCCAGACTGAACTAGATGCTgctaaagtattaaaaaatgaagagatAATAGACGAAACGTTGAAAACAGAGTGTATACAAGACGACGAAGAGAAGCCTTCAATTTCGCGCACAAATAGATTGCGTTGTACGCAATGCATCAAGTCTTTCCATACAAAAGTGGCCTTACAAAGGCATGCCATTGTACATAAGCGCATAACTAAATTGCGAAaggaaaatatcgaaaataggAAAGTGAATTatgagaaagaaaaggaaattgtGAGTATACAAGACAAAAGGATCAATGTGCAAGAGAAGAGACAAAAAAATGATACCTTAAAGGAACAACGAAAGAATCTGAAATTCGCGTGTAAAGTTTGTTCAAAGCAATTTACTTATCAAAAGTCTTTTGTTAGGCACACGAGGAGTCATCCAGAATATAAATCAGAAGAATTGGATGATACCAATCGATATTCCGTGAAGGAAAAAAGATCGGTGGAGAAGgtcgaagaagaagaagaagaggagaaCGACGAAGACGACGAGGAGGACGAAAACCTCCCCGCTGAAAGTTTACACTCTACTCAATATGGAAAGCTGTTTCCAACAAAAACAAATCTTAAAAGACACGTTTCCACGCACAGCGGATTGAAGTACACTTGCGGCACCTGCGGCAAAGGATTTTCCCGTGTGAACAAATTGAAGGATCACGAGCAATCGAAACACAAGTCTGAAATGTTCGAAAGCTCCGATTTCGACGAGAAAGAAGACACGGACAGTGTAAATAAAGAAGACTGTTTAGAGCGAAGGAAGAAAGAACGTCACAACAAGCCACACAAATGCGCGCTCTGCCCCATATCCTTCGCGCAGGCTCAGTCTCTAGCGAATCACATAGAGCGTCACAAGCGCGCCAAAGAAACGCACAAGAGGTTCTTTTGCGAGGTCTGCAGTAAGTGTTTCGCGCATAGCGGTTCCCTCGTCGTTCATATGCGCACTCACACGGGAGTGAAGCCGTACGTGTGCAACGTGTGCAGCAGGGCTTTCGCGAAGAGCACTTATTTGCAACTACATTTACGCACGCACAGCGGAGAGAAGCCTTACATTTGTGAGTATTGTAGCAGAGCCTTCGCGCGCGCGAATACATTGGCGCGGCACATCACGATGCACACCGGGGAAGCGAAGTATCACTGTCAAATCTGTACAAAGTCGTTTAGAAGGCTGACTACGTTGAATAAACACACGTACACGCACACCGGGCAGAGGCCGTACGCGTGTAAAATTTGCGCGAAGCGATACAAGAACGCCGAATCACTTAACGAGCATAGAAAAAAGTGCAAGGCGCAGCAGTTGTCCAATACTAGTTACGGGGTCTCCGTGGAAAACTGGGTACAACAACAGCAAGATGCGAACGTTCCGCAGGTTCTTGTGTATTCGCAAAGGAAATTGATGGACGACGCGTCCGTCGTGGAAGACCCGAACGTTTATATAAATGCGAAGCAGTTCAAAAATCcttattatacaatttatcCGAATATGTAA
- Protein Sequence
- MDVSKNDQLVDPYDKIYGDECRICLKRAVEICELFRNGDAISHKLMAVASVQVEEGDGLPPVICLPCNQRLDASYNFKCQIRNSDEKLRQVLKLKSSGNIVSSTSIVSAIITDVISSVISSEKENTQKEEVCPGNFCPDNFCFSKDDASYCLNSDKSLFYYERESHNQLNNVEQKKGAENVDVYRNLLEVPARQIDSIKQEDEELVLFHEHIEQNTVETPMREITSVKEEELSLFHESVEENKGSSSQTELDAAKVLKNEEIIDETLKTECIQDDEEKPSISRTNRLRCTQCIKSFHTKVALQRHAIVHKRITKLRKENIENRKVNYEKEKEIVSIQDKRINVQEKRQKNDTLKEQRKNLKFACKVCSKQFTYQKSFVRHTRSHPEYKSEELDDTNRYSVKEKRSVEKVEEEEEEENDEDDEEDENLPAESLHSTQYGKLFPTKTNLKRHVSTHSGLKYTCGTCGKGFSRVNKLKDHEQSKHKSEMFESSDFDEKEDTDSVNKEDCLERRKKERHNKPHKCALCPISFAQAQSLANHIERHKRAKETHKRFFCEVCSKCFAHSGSLVVHMRTHTGVKPYVCNVCSRAFAKSTYLQLHLRTHSGEKPYICEYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTTLNKHTYTHTGQRPYACKICAKRYKNAESLNEHRKKCKAQQLSNTSYGVSVENWVQQQQDANVPQVLVYSQRKLMDDASVVEDPNVYINAKQFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169325;
- 90% Identity
- -
- 80% Identity
- -