Pmec024900.2
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000011.1:709262-713284[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0042 0.73 11.6 1.2 2 23 287 308 286 308 0.95 2 11 0.0029 0.51 12.0 2.2 1 23 316 339 316 339 0.96 3 11 0.00023 0.04 15.5 2.1 1 23 390 412 390 412 0.97 4 11 1.8e-05 0.0031 19.0 3.2 2 23 465 486 464 486 0.96 5 11 3.3e-05 0.0057 18.2 0.7 1 23 491 514 491 514 0.96 6 11 1.5e-05 0.0026 19.2 0.3 1 23 551 573 551 573 0.98 7 11 8.4e-07 0.00015 23.2 0.9 1 23 583 605 583 605 0.96 8 11 2.4e-06 0.00041 21.8 1.2 1 23 611 633 611 633 0.99 9 11 1.2e-05 0.0021 19.6 0.2 1 23 639 661 639 661 0.98 10 11 9.1e-05 0.016 16.8 4.6 1 23 667 689 667 689 0.98 11 11 0.0016 0.27 12.9 0.2 1 21 695 715 695 716 0.94
Sequence Information
- Coding Sequence
- ATGGATGTTTCAAAAAACGATCAGTTAGTTGATCCGTATGATAAAATTTACGGTGACGAAtgtcgaatttgtttaaaaagagCTGTTGAAATTTGTGAACTGTTCCGAAATGGGGACGCTATTTCACACAAACTTATGGCTGTTGCTTCCGTACAGGTGGAAGAAGGAGATGGATTACCGCCAGTGATATGTTTGCCTTGTAATCAACGCTTGGACGCAtcttacaatttcaaatgTCAAATACGAAATTCGGATGAGAAACTTCGTCAggtgttaaaattaaaatcttctgGCAACACAGTCAGTAGCACCAGCATAGTCAGTGCGATAATTGCGGATGTGATATCCAGTGTAATATCTTCTGAAAAGGAGAACACGCAGAAGGAAGAAGTTTGCCCTGGAAACTTCTGCCCcgataatttttgtttctcaaAAGACGACGCCTCTTATTGCTTGAACTCAGACAAAAGCTTGTTCTGCTACGAAAGAGAGTCGCACAATCAATTAAACAATgtagaacaaaaaaaagacGCAGAAAATGTGGATGTTTATAGAAATCTATTAGAAGTGCCAGCGAGACAAATTGATTCGATTAAACAAGAAGACGAAGAATTGGTCCTGTTTCATCAACACATAGAGcaaaatacagtagaaactCCTATGAGAGAAATTACGTCTGAGAAAGAAGGATTatctttgttccacgaaagcGTGGAAGAAAATAAAGGGTCTACCTCCCAGACTGAACTAGATGCTGctgaagtattaaaaaatgaagagatAATAGACGAAACGTTGAAAACAGAGTGTATACAAGACGACGAAGAGAAGCCTTCAATTTCGCGCACAAATAGATTGCGTTGTACGCAATGCATCAAGTCTTTCCATACAAAAGTGGCCTTACAAAGGCATGCCATTGTACATAAGCGCATAACTAAATTGCGGTACGTTTGTTATATTTGTGATAAACAATATTCGTCTCATGCGAAAGTAAAAGAACATATAATAGTATGTCATGAGGCGCTTGATAGAAAGGAAAATATCGAAGATAGGAAAGTGAATTATgaggaagaaaaggaaattgtGAGTATACAAGACAAAAGGATCAATGTGCAAgAGAAGAGACAAAAAAATGATACCTTAAAGGAACAACGAAAGAATCTAAAATTCGCGTGTAAAGTTTGTTCAAAGCAATTTACTTATCAAAAGTCTTTTGTTACGCACGCGAGGAGTCATCCAGAATATAAATCAGAAGAATTGGATGATACCAATCGATATTCCGTGAAGGAAGAAAGATCGGTGGAGAAGgtcgaagaagaagaagaagaagaggagaaCGACGAAGACGACGAAGAAGACGAGGAGGACGAAAACCTCCCCGCTGAAAGTTTACACTGTACTCAATGTGGAAAGCTGTTTGcaacaaaaagaaatcttaaaagACACGTTTCCACGCACAGCGGATTGAAGTACACTTGCGGCACCTGCGGCAAAGGATTTTCCCGTGTGGACAAATTGAAGGATCACGAGCAATCGAAACACAAATCTGAAATGTTCGAAAGTTCCGATTTCGACGAGAAAGAAGACACGGACAGTGTTAATAAAGAAGACTGTTTAGAGCGAAGGAAGAAAGAACGTCACAACAGGCCACACAAATGTGCGCTCTGCCCCAAATCCTTCGCGCAGGCTCAGTCTCTAGCGAATCACATAGAGCGTCACAAGCGCGTCAAAGAAACGCACAAGAGGTTCCTTTGCGAGGTTTGCAGTAAGTGTTTCGCGCAAAGCGGATCCCTCGTCGCTCACATGCGCACTCACACGGGAGTGAAGCCGTACGTGTGCAACGTGTGCAGCAGGGCTTTCACGAAGAGCACTTATTTGCAACTGCATTTACGCACGCACAGCGGAGAGAAGCCTTACATTTGTCAGTATTGTAGCAGAGCCTTCGCGCGCGCGAATACATTGGCGCGGCACATCACGATGCACACCGGGGAAGCGAAGTATCACTGTCAAATCTGTACAAAGTCGTTTAGAAGGCTGACTTCGTTGAATGAACACACGTACACGCACACCGGGCAGAGGCCGTACGCGTGTAAAATTTGCGCGAAGCGATACAACAATGCCGGATCACTTTATGCGCATAGAAAGAAGTGCAAGGCGCAGCAGTTGTCCAATACTAGTTACACGGTCTCCGTGGAAAACTCGGTACAACAACAGCAAGATGCGAACGTTCCGCAGGTTCTTGTGTATTCGCAAAGGAAATTGATGGACGACGCGTCCGTCGGTCAAGTTGCACCTACGCCGCAGTACATGATCGCGAACGTGCACAATCAGAAAAGTCTGGGATCGAACATCATCCAACCGTTTACAGTGGAAGACCCGAACGTTTATATAAATGCGAAGCAATTCAAAAATCcttattatacaatttatcCGAATATGTAA
- Protein Sequence
- MDVSKNDQLVDPYDKIYGDECRICLKRAVEICELFRNGDAISHKLMAVASVQVEEGDGLPPVICLPCNQRLDASYNFKCQIRNSDEKLRQVLKLKSSGNTVSSTSIVSAIIADVISSVISSEKENTQKEEVCPGNFCPDNFCFSKDDASYCLNSDKSLFCYERESHNQLNNVEQKKDAENVDVYRNLLEVPARQIDSIKQEDEELVLFHQHIEQNTVETPMREITSEKEGLSLFHESVEENKGSTSQTELDAAEVLKNEEIIDETLKTECIQDDEEKPSISRTNRLRCTQCIKSFHTKVALQRHAIVHKRITKLRYVCYICDKQYSSHAKVKEHIIVCHEALDRKENIEDRKVNYEEEKEIVSIQDKRINVQEKRQKNDTLKEQRKNLKFACKVCSKQFTYQKSFVTHARSHPEYKSEELDDTNRYSVKEERSVEKVEEEEEEEENDEDDEEDEEDENLPAESLHCTQCGKLFATKRNLKRHVSTHSGLKYTCGTCGKGFSRVDKLKDHEQSKHKSEMFESSDFDEKEDTDSVNKEDCLERRKKERHNRPHKCALCPKSFAQAQSLANHIERHKRVKETHKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHRKKCKAQQLSNTSYTVSVENSVQQQQDANVPQVLVYSQRKLMDDASVGQVAPTPQYMIANVHNQKSLGSNIIQPFTVEDPNVYINAKQFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169343;
- 90% Identity
- -
- 80% Identity
- -