Pmec024813.2
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000010.1:12506117-12509083[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.2 13.3 0.4 1 20 61 80 61 82 0.94 2 13 1.9e-06 0.00032 22.1 1.1 1 23 162 185 162 185 0.95 3 13 1.4e-05 0.0024 19.4 3.5 2 23 192 214 191 214 0.95 4 13 0.00068 0.12 14.0 2.2 1 21 220 240 220 241 0.94 5 13 2.7e-08 4.7e-06 27.9 2.2 1 23 252 274 252 274 0.98 6 13 0.002 0.35 12.6 0.5 2 23 284 305 283 305 0.97 7 13 0.0021 0.37 12.5 1.0 3 23 313 333 311 333 0.97 8 13 3.1e-06 0.00054 21.4 2.7 1 23 339 361 339 361 0.99 9 13 2e-06 0.00034 22.0 1.8 1 23 367 389 367 389 0.95 10 13 2.1e-05 0.0036 18.8 0.9 1 23 395 418 395 418 0.94 11 13 9.4e-07 0.00016 23.0 0.9 1 23 424 446 424 446 0.98 12 13 2.6e-08 4.5e-06 27.9 1.4 1 23 452 474 452 474 0.99 13 13 6.6e-05 0.011 17.2 1.6 2 23 481 503 480 503 0.93
Sequence Information
- Coding Sequence
- ATGGAGCAAATCATGGAAATCGTGAAAGTTGAAGACACGGTGTTGATAGGAAGTGCGGCtttggaaaatttattcgATCCAGATAATCCGCAAGAAACTATTATAATGACCACAGAACAAGACTCTGATAATATTAAAGTCATCGCAGAAggtgatcaaattatacaaattataacGGATTATGAGTGTGTAACATGTCATCGTGTTTTTCAGTCGCAAAATATGCTGAAGGAACATTTAGATATGTGCAGAGAAGAGGATGattctacaaatattttgGAGTTAGACAACTTTGAAAACTATGAATcagaagaagaggaaaaagatGATGATTCAGAATGTGCAAACAATAATGCCGAAGATTCTACAGATTCTAGTTCTAACGGtcgaaagaataataataagcCTGTAATTTTGCCTGTACCTGATACCCAATGTCACTGCTGCGCCGAAAACTTGAACACTGCGCATAGCGGCGGTCAGCACAAATGCCCAAACTGTGATCTTTCCTTTAAGAAAAAAGCATCTTTAAAACGACATATTGTAGTAATCCATTGGCAGTGCGATTCCTGTATTTGTAAAGAATGTGGAGAATCATTTAATGATAAGAAATCATTGAATAAACATCGTTATACCACGCATTCAGAccataaaatttataaATGCGAACCCTGtgatacatatttttctcGAAGCTATCACCTAAATCGTCATAAAATGCAGTCTGGTTGTCACGGCAACATTCTTAATACATTTAGTTGTCAAGTATGTAAAAAAGTTTTCACACGCAAGGATAATTTACGCGAACATTTGCGCACGCACGCTGGAACCCtacaaaaacagaagaaaccatgtaaatattgttctaaagaatttttcactGGCCAACAATTACTGATTCACGAACGTGTGCACACAGGAGAACGACCTGTTCATTGTGATTTGTGTCCAAAGACATTTTTATCGGCGTTAGCATTGAAAAAGCATAGACGCGTGCATACGGGAGAGAAGCCATTCGAATGCAAATATTGTCGCAAAAAGTTCGCTGCACGAGAAACCTTAAATCGTCATCAGAGAACTCATACTGGCGAAAAGCCACACGTTTGTCAATATTGCGGCAAGTCATTTATTCAAGCGGCTCAACTAAGAGCGCACATATTCCACCATACGGGTGAAAATGGTTTCTATTGCGATGTATGTGGAAAAGCGTTTAATCGAAAAGCTCGGTTGAACGTTCATAAAAAGTTTATCCACGAAGGCGCAACACCGTTTACGTGTCAGGAGTGCGAGAAAAGATTCATAAGAAGAGAAGATCTTGTTAAACATATGCAACTTCATACAGGAATTAAACCATTTAAGTGCGACAAATGCGAGAAAGCATTTTCTACGAAATCTTCTCTGCAAGCTCATTTAAACACTCATAGACGAGAACCACCGCAATCGTGTGTCGAATGCAACAAGGTGTTCATTCGACAAGACTGTTTGATGAGGCATGTGAAAGCGAAACATCGTGAATTATTGGAGGATGTAATGAACGAAGTTGAGAGAAAGCATTTACAAGCGCAAATGCATAATATTGCGACTATTGCTGCAGAGAAGACGAAACGAGGAGAATCCAAAAGACTTACCACCAATGAATTGTTGCAAGCTATTTCggatcttttaaaaatattaattgacgATGAAACGCTTCAGTTATTCGGATGGCCCGACACCACTATTCAAGATATTTTGGAAGCTGTTATCAGAAGATGCGGGCATTTACCATTAACATCGGACAGCGATTTATTGTTTACTGAAAGATTACGAGAAAACGTGAAACTCTTGTTCAGCGTTGTTATAGAAGACGATACGGTGAAATCTCTATTGACCACGAAAACTGTAGATGATGTTATTCTACATGTTTTAGAGATTTCGAAAGAATACACGTCAGATTtgtag
- Protein Sequence
- MEQIMEIVKVEDTVLIGSAALENLFDPDNPQETIIMTTEQDSDNIKVIAEGDQIIQIITDYECVTCHRVFQSQNMLKEHLDMCREEDDSTNILELDNFENYESEEEEKDDDSECANNNAEDSTDSSSNGRKNNNKPVILPVPDTQCHCCAENLNTAHSGGQHKCPNCDLSFKKKASLKRHIVVIHWQCDSCICKECGESFNDKKSLNKHRYTTHSDHKIYKCEPCDTYFSRSYHLNRHKMQSGCHGNILNTFSCQVCKKVFTRKDNLREHLRTHAGTLQKQKKPCKYCSKEFFTGQQLLIHERVHTGERPVHCDLCPKTFLSALALKKHRRVHTGEKPFECKYCRKKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLNVHKKFIHEGATPFTCQECEKRFIRREDLVKHMQLHTGIKPFKCDKCEKAFSTKSSLQAHLNTHRREPPQSCVECNKVFIRQDCLMRHVKAKHRELLEDVMNEVERKHLQAQMHNIATIAAEKTKRGESKRLTTNELLQAISDLLKILIDDETLQLFGWPDTTIQDILEAVIRRCGHLPLTSDSDLLFTERLRENVKLLFSVVIEDDTVKSLLTTKTVDDVILHVLEISKEYTSDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361068; iTF_00360359; iTF_00306428;
- 90% Identity
- -
- 80% Identity
- -