Pmec012827.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- lola
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000005.1:10347675-10349972[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.6 1.3e+04 -2.9 0.2 30 45 180 196 180 196 0.76 2 5 5.7e-08 0.00017 22.4 0.0 2 38 200 236 199 242 0.84 3 5 9.4e-12 2.7e-08 34.5 0.0 5 39 253 286 250 293 0.85 4 5 0.13 3.9e+02 2.0 0.0 21 34 320 333 306 338 0.80 5 5 3.9e-11 1.1e-07 32.5 0.1 4 39 364 399 361 403 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAAGCTGTTGGCGAACATGATATTAATCAGAGCTATTGCTTCAAATGGAATGATTATCAAAATCATTTGTCCGATGTAGTTAGACAGCTGCTGGAGGAGGATTGCATGGTGGATGTCACATTGGCAGCTGCAGGGGAACGCATCCATGCCCATCGCATTGTCTTATGCGCTTGCAGCACTTTGTTTCGAGACGTTCTGAGTCAAGTAAACGAAGATCATCCGACAATAATACTCAGCGATATATCAGCGCAAGATATTAAGTCGATCATAGAATTTACTTACCATGGCGAAGTACGAGTACCAGTGGAGAATATCAATAGTTTATTGGACGCAGCACGTTCCTTAAAAATATGCGGTCTCATTGAGATCGATGGACTAGACGAAAGCGATTCAATCGCGAGTGTAAAAGATTTTAATGACAATAACGAAGAACCAATGACTGTAATTAGCGAAACGGAAGAAAGTGTTATTAACCCGATGCAAAATAGTTACGAAGACTTGGAGGATCCACAGGAACAAGAAGTTACAGAGAATTCAGTTTTaagtaaaaagaagaaacgcaGGCGCGACACGGCAAAACGGGATTACAGCGACGATATGCTGGCGTCTGCGATAAACGATTTAAAGTCGGGGCAAACTTTGATAGAAGCCTCGACTAAGTATAATATTCCGCGATCGACGTTATACATGCGTGCCAAAGCGCTGGGTATACATTTAAATGCATCGAGGAACGAATATCCGGCGGAGTGTATGAAAGCAGCCATAAACGCAGTAATCAACGGATCAAGTTTACAACACGCGTCAGAAATGTTCAGTATACCGAAGACTGTATTATGGAGAAGAATCCAGAAGGAAGGATATCAAATATTGCGTTCCGAAATGCGAAGATCTTACGGCTCCGACAAACGGGAAGCGGCAGTCAAAGCTTTGGAAAGAGGAGAGAATTTGACTAAAGTTGCGCTCGAGttcaaaATTCCAAAGACCACTTTGTTCAGAGATAAAGCTCGATTAGTGGGCGAGGGAAAACTGCCGCTATCGTTTTGGAAAAAGCGTAAAACTGAGAACGAGGAATTGAAGAAATCTCGGCTGGAGGAGGCTGTCGCTGCTTGCAAAGGAGGGAAGATGTCGCAGGCGGCCGCGTCGATGACTTATCGTATTCCTAAAACGACAATATGGAGACGTCTTCAACAGGACGGCAAGAAATGCGAACGACCGTTGGGCTCGAAAAAACAGCGGGTAACGGATTCGAAACATAGTCCGGAAGTGAAAACGCAAGAAGGATCGGACTTTACGTATTGCGAGGTTTCGTCGGAGATTCCTATAACTTACATAGACGAGAGTAGTATCCCTGAGGATTCTGTGATAATACTAACAGCAGAAGACATGGATGGACTTAATTTGGAAGAAGGACGACCGATCATTGTTAACTCGGAATCGGTACAGGAATACGTTCCCTGCACCATAAGCATCGAAGAAAATTCGAATTACTCGCAGACGGAAAGTTAA
- Protein Sequence
- MSEAVGEHDINQSYCFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFRDVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENINSLLDAARSLKICGLIEIDGLDESDSIASVKDFNDNNEEPMTVISETEESVINPMQNSYEDLEDPQEQEVTENSVLSKKKKRRRDTAKRDYSDDMLASAINDLKSGQTLIEASTKYNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVINGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMRRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVGEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQDGKKCERPLGSKKQRVTDSKHSPEVKTQEGSDFTYCEVSSEIPITYIDESSIPEDSVIILTAEDMDGLNLEEGRPIIVNSESVQEYVPCTISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_01169271;
- 80% Identity
- iTF_01169271;