Pfun009340.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- -
- Assembly
- GCA_027564355.1
- Location
- JANSTX010028033.1:3764-6907[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 6.4e-05 0.36 10.9 0.2 26 54 316 344 313 344 0.92 2 7 0.0074 41 4.3 0.1 22 44 340 362 337 376 0.88 3 7 0.68 3.8e+03 -2.0 0.1 23 45 375 397 365 408 0.79 4 7 0.55 3.1e+03 -1.7 0.1 26 44 406 424 383 428 0.80 5 7 0.00018 1 9.4 0.0 20 52 428 460 419 462 0.83 6 7 0.018 1e+02 3.0 0.0 21 43 457 479 453 488 0.80 7 7 0.062 3.4e+02 1.3 0.0 21 44 541 564 536 568 0.81
Sequence Information
- Coding Sequence
- ATGTCTGAATTAGAATACTGTGATATTGATAAAGTATGTAGAGGTTGTTTGACGAAGAAAACAGATATGAGACCAATATTTGGAACTTGTCTGGATAAAATGTTAATATCTGTGGCTGAAATTGATGTACAATCTGGTGATGGTCTGCCCGCATTAATGTGCATTCAATGTGTATTACAAGTTAGTCGTGCGTTTACATTTCGTCAACAATGTCAACGTTCCGATTCAATATTAAAAGATTTATATAAAAAAAATAAACATCAGCATGATATTGCAACCATTGAATATCAAGAAAGTACAATTGAAACACATAATAATAATGACAATAATACTGCATTGGAAACGATTGAAACAACAAATATAATAAATCATAATAATAATAGTAATGATAATAATATAGAATTACATTTTCAAGATGTTGATGGTCAAATAATAAGTGGCGTTTATTTAGCCAATGATCAAACATTTGAAATTAGTAATGATCAAAATATACAAATAAATTTAAGTGGACATATCGATGGTGATAAAATTTATGCAACTTTACCCGAAAATTTAACCGATGTTATTTATCATGAAAATGTTGTTGATGAACTTCATGTAAATAATGTTAAATTTGATATGAATTTAGAAACAATAAATAAGGTTGACAATATTAAATTTGATGATTTGAATTTAACTAAAATTGAAAGTGTTAAATTTGATATGAATTTAAATATTAATCAAGTTATTGCAGATGATAAAACTAATGTATCAATAGAAAATAAAAACGAAAATAATTTTGATGATTATTCACAAGATACAAACATTACTGACGACATATCATTAATAACTAATATGAAAAGTGAACAAATATCAAATACATGTACACAATGTGCTTTGCAATTTAAATCGTTAGTCGAATTTAAAGTACATCTTCGTAATGTTCATAATAAGATaatatcatatcaatgtgatatatgtaataaattatttactgaaagtaaaattttacgtagacacttaaaaatacataatccaaataaaccacatgtatgtaatgtgtgtcatatgtcatttgcggaaagttcaaatttgacaaaacacaagaagaaacatactggtgaaTTAAGAAATGTTGTGGGCAAACCAAATCTATGTTCTGTCTGTGGTAAACGTTTTAAATGGGCAAGTTCATTATCAaaacatatgaaacatcatacgagacataaaattttaaattgcccatattgtccaaagtattatgttgaagcaagatcattaaaaattcatatgcgaagtcatactggtgagaaaccatttgtatgtcaaatttgtaataaaggatttacacaattgggtaatttggaaaagcatttgcgagtgcatacgggtgagaaaccctttatttgtccggtttgcggaaaaggattctctcaaagtggttacgtttcaattcatatacgtacccatactggtgaaagaccgtatatttgtacagaatgtggcagaggttttgctggatctaatacattggctatacatatgcgtacacatacaggattaagaccatatccttgttcactttgtgataaaacttttgcacgtcaagaaacggctgtaattcatttacgaacacatacaggagaaaaaccACATATTTGTAAAATATGTCATCGTGGATTTACAAGTTCTGGACATTTAACGGGACACATGAGATCACATACCGGAATTAAAACACATGAATGTATTATTTGTAATAAGAAATTTGCTGGGGGTAGTAGTTTGAAGGTTCACATGAAAATTCATAATAATGTGGATAAATTATTTAAATGTACAAAATGTGATAAGAAATATATACAATCGATTTCATTGGCGGAACATCAATTAACACATGAGCCAACAACAGAATTATCACACAATTTAGATGAAATAAATGATGCATTCCAATCACGTGTAACTAAAGTAGAAACTGTAGAAATGCAAAGAGAATTAAATTAG
- Protein Sequence
- MSELEYCDIDKVCRGCLTKKTDMRPIFGTCLDKMLISVAEIDVQSGDGLPALMCIQCVLQVSRAFTFRQQCQRSDSILKDLYKKNKHQHDIATIEYQESTIETHNNNDNNTALETIETTNIINHNNNSNDNNIELHFQDVDGQIISGVYLANDQTFEISNDQNIQINLSGHIDGDKIYATLPENLTDVIYHENVVDELHVNNVKFDMNLETINKVDNIKFDDLNLTKIESVKFDMNLNINQVIADDKTNVSIENKNENNFDDYSQDTNITDDISLITNMKSEQISNTCTQCALQFKSLVEFKVHLRNVHNKIISYQCDICNKLFTESKILRRHLKIHNPNKPHVCNVCHMSFAESSNLTKHKKKHTGELRNVVGKPNLCSVCGKRFKWASSLSKHMKHHTRHKILNCPYCPKYYVEARSLKIHMRSHTGEKPFVCQICNKGFTQLGNLEKHLRVHTGEKPFICPVCGKGFSQSGYVSIHIRTHTGERPYICTECGRGFAGSNTLAIHMRTHTGLRPYPCSLCDKTFARQETAVIHLRTHTGEKPHICKICHRGFTSSGHLTGHMRSHTGIKTHECIICNKKFAGGSSLKVHMKIHNNVDKLFKCTKCDKKYIQSISLAEHQLTHEPTTELSHNLDEINDAFQSRVTKVETVEMQRELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01168593;
- 90% Identity
- iTF_01168593;
- 80% Identity
- iTF_01168593;