Pfun000782.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- Mbd2
- Assembly
- GCA_027564355.1
- Location
- JANSTX010041050.1:4534-8148[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-22 2.6e-18 65.3 0.0 3 73 9 74 8 78 0.92 2 2 0.0022 6 6.5 0.0 29 57 113 141 81 166 0.78
Sequence Information
- Coding Sequence
- ATGAATATAACAATTGAACCTGACCAAAAGAAAAGTGATTGTACGGTTTTGCCAAAAGGCTGGCAACGTGAAGAGGTCTTAAGAAAGTCTGGATTGTCTGCTGGAAAAGTTGATGTTTACTATTATAGTCCAACGGGAGGTAAAGTAGAAAGTAAATCTAAACTAATGAGACAATTAGGTGATGTTGTGGATTTGTCAACGTTTGATTTTCAATCAGGTAGATCAATAAATAATAATCAATCTATGGTATATCAACAACGTTCAACATTTAGAAGGCATTTAGCCGAAACTCCACCGTCATCAATTAAACAGCAACAATTTGATTATAGTCGAGGTATTCGTACAGATGTTTCATTAGTACCACCAATTCGGCAAACCGCTTCAATATTCAAACAACCAGTTACTGTTTATAGAACACAAGAAATTATAGTGAAAACAGATTTAAAACATGGTATACAAGATAAACCAAAACAATTATTTTGGGAGAAAAGATTAGAGGGTTTAAATGCATGTGATACTGATGGCATTGAATTCGGACCAGTTGAATTGCCAAAAAATTTAAAACCAGTTGGTCCAAATGTATCAAATGGTACATTATTACAATCTATTGCAACTGCATTACATGTAACACAACAACAATCAGTGACTGGTCAAACAGCAGCAACAGATGCATTAATATCAAATTCGGGTGTATATTTAAATCCAGAACAACCATTAATGCATTCAGTTAATATAACCGAAGATGATATTAAACAACAAGAAGATAGGGTAACAAATGCAAGAAAGAAATTGCAAGATGCATTAATGGAATATAAATAA
- Protein Sequence
- MNITIEPDQKKSDCTVLPKGWQREEVLRKSGLSAGKVDVYYYSPTGGKVESKSKLMRQLGDVVDLSTFDFQSGRSINNNQSMVYQQRSTFRRHLAETPPSSIKQQQFDYSRGIRTDVSLVPPIRQTASIFKQPVTVYRTQEIIVKTDLKHGIQDKPKQLFWEKRLEGLNACDTDGIEFGPVELPKNLKPVGPNVSNGTLLQSIATALHVTQQQSVTGQTAATDALISNSGVYLNPEQPLMHSVNITEDDIKQQEDRVTNARKKLQDALMEYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -