Basic Information

Insect: Pentalonia nigronervosa
Gene Symbol: L
Assembly: GCA_014851325.1
Location: scaffold:185729-200013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 1.5 1.8e+02 3.5 7.0 1 23 3 25 3 25 0.97

2 21 6.2e-07 7.2e-05 23.6 5.6 1 23 31 53 31 53 0.99

3 21 7.8e-06 0.0009 20.1 0.9 1 23 59 81 59 82 0.96

4 21 0.00012 0.014 16.4 2.0 1 23 99 121 99 122 0.96

5 21 0.0063 0.73 11.0 0.7 1 23 146 169 146 169 0.97

6 21 2.7 3.1e+02 2.7 1.0 1 23 207 230 207 230 0.94

7 21 0.003 0.35 12.0 2.1 2 23 435 456 434 456 0.94

8 21 0.00013 0.015 16.3 1.5 1 23 464 487 464 487 0.96

9 21 0.00025 0.029 15.4 0.8 1 23 492 515 492 515 0.95

10 21 0.00057 0.066 14.3 0.8 2 23 565 586 564 586 0.96

11 21 0.072 8.4 7.6 3.6 1 23 590 612 590 613 0.96

12 21 0.91 1e+02 4.2 0.2 3 23 658 680 657 680 0.86

13 21 0.0011 0.12 13.4 4.6 2 23 694 715 693 715 0.96

14 21 0.0024 0.28 12.3 0.3 1 23 725 747 725 747 0.98

15 21 0.66 77 4.6 2.8 3 23 756 776 754 776 0.97

16 21 0.00069 0.079 14.0 0.1 2 23 851 873 851 873 0.97

17 21 0.12 14 7.0 1.3 1 23 877 899 877 899 0.97

18 21 0.062 7.2 7.9 0.1 2 23 911 932 910 932 0.95

19 21 0.0073 0.84 10.8 0.0 1 23 940 963 940 963 0.96

20 21 0.5 57 5.0 0.2 1 23 970 994 970 994 0.94

21 21 7.3 8.4e+02 1.3 5.4 1 22 1021 1042 1021 1044 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	1.5	1.8e+02	3.5	7.0	1	23	3	25	3	25	0.97
2	21	6.2e-07	7.2e-05	23.6	5.6	1	23	31	53	31	53	0.99
3	21	7.8e-06	0.0009	20.1	0.9	1	23	59	81	59	82	0.96
4	21	0.00012	0.014	16.4	2.0	1	23	99	121	99	122	0.96
5	21	0.0063	0.73	11.0	0.7	1	23	146	169	146	169	0.97
6	21	2.7	3.1e+02	2.7	1.0	1	23	207	230	207	230	0.94
7	21	0.003	0.35	12.0	2.1	2	23	435	456	434	456	0.94
8	21	0.00013	0.015	16.3	1.5	1	23	464	487	464	487	0.96
9	21	0.00025	0.029	15.4	0.8	1	23	492	515	492	515	0.95
10	21	0.00057	0.066	14.3	0.8	2	23	565	586	564	586	0.96
11	21	0.072	8.4	7.6	3.6	1	23	590	612	590	613	0.96
12	21	0.91	1e+02	4.2	0.2	3	23	658	680	657	680	0.86
13	21	0.0011	0.12	13.4	4.6	2	23	694	715	693	715	0.96
14	21	0.0024	0.28	12.3	0.3	1	23	725	747	725	747	0.98
15	21	0.66	77	4.6	2.8	3	23	756	776	754	776	0.97
16	21	0.00069	0.079	14.0	0.1	2	23	851	873	851	873	0.97
17	21	0.12	14	7.0	1.3	1	23	877	899	877	899	0.97
18	21	0.062	7.2	7.9	0.1	2	23	911	932	910	932	0.95
19	21	0.0073	0.84	10.8	0.0	1	23	940	963	940	963	0.96
20	21	0.5	57	5.0	0.2	1	23	970	994	970	994	0.94
21	21	7.3	8.4e+02	1.3	5.4	1	22	1021	1042	1021	1044	0.87

Sequence Information

Coding Sequence: ATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGATCGGCACGTGAAATTACACACGGGGGACAAGAAGTACAAGTGTACTCAATGTGACCATGCTTTTTCAAGGAGCGATCACCTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAGAACCATCACAAACGGGCTGCGGAACGGGCCAACTCGCCACAGATTTCCGGGCCCTCTTACAAGTGTCTGCAGTGCACGCAGATTTTTCGCAAACCCGACGAGCTTCAGAATCACACTGCGACGCATCATCTCGGCGAGCAACTTTTGTCTAACTCTCGGAGCTCGAAACGTTCGACACCGCCGAAAACGCCGAACCAATACATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCGTTGCAACAACACTTCCAGACCAAGCATTCTGCGATCGTCAACGGCAAGCCTCAAGAGGACATCTTCTCGGTCATATCGCCGGCGGCCGCGTTCCCATGGCTCAATTTTGCCGACTCGCCGGCCCTAGCACTGCCTCCGTACTCGTGTCGGTTGTGCATGAGCCAATTCCCGTCCGTCACTTCGTTACAAAAACACTTTACGACCGCTCACTATCTGAACTCCGTTCTCAACAACAACATACAAAACAATAACAACAACAATAGCAGCAGTAGCAACAACAACAACAACAACAACAACAACAACGCCAACGCCAACACCAACGGCTGCAAAGGCGGCGTCGGCGTGGTGCCGCTGTTCAACTGGCCGGCGATGGCCGGCACCAACGGATACCATCAACACCATCACCGCCACTCGACATCGGGCGGCGGTTTCTTGCCCGAGGAAACCGTTCAGACGGGTCCCACAGACTTGTCGTTGTCGTCGTCCAACAGACACGGTGGCGGCAAACACAATCACACGTCGTCGGGCAAGCATAAGTCGGCGGACGACCAGCGGAACCACGCGACCAGCAAAAAGTCCCGTTCGTCGCCCGGCCACGATCCATCGGCGGCGGTCGACCTGCAGCAGCAGCAGCGTCACGTAAAACAAGAAGGCCACAACGTTTACGACGGCGGCAAACACTCGCAACAGCAACAGCAGCAGTCGCGGCCGGCCGCGTCTCGTCCGTCCTCGTTGACGGGCGTCTCCAACCACAAGAATAACAACAACAACAACAACAACAACAACAATAGCATTCACGCTGACAACAACAAGATTCAGTTGCCGTGTCCGCATTGTCATTTGGCGTTCACGCACTTCGAAGATTACCAACAGCACGTCATCGGCCACTTCCTGATGGCCGCCGCCGAGTACTCGTGCCAGGAGTGTTCCACCTCGTTTGCCACGTCCGAACACGTCCAGAAACACCTGATGGAAACGCACGCGCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAATGTTCCCGACCAAGTCAGCGCTAAAGGTGCACTTCAGCATGAACCACGGCAGCGAACACCGCATGTTCCGCTGCAACAATTGCACAGGCCTGTCCCGGCCGCTGTTCCAGACGGAAATCGAGTTCATCGATCATCTGCGCAACGCCCATTACTCCGCGAGATCGCCGCCGCCGGTCCAAGCGAACCTGATGCTGAGGTGTTTGGTGTGCCACGCCACGTTCAACACGCAGTCTGACATGGAACAACATTTAGCTAGTCACTCCAAACAGTTCCAATGCCAATTTTGTTCGGAAGCGTTCCACATCGAGTTCTTGTTGGACAGACACATACAGACACATCACAGTTCGACCATTTTGAGCCACCTCAACCGGAACCACAGGGAATCGCCAAATTCTATGTGCACGTCGCCCACGTACATCTCTAGAACGGCGGACGGCTGCATCAAGCATCCGACGGAAAACGGAACGAACGCCTGTGATATATGCGAGAAAAACGATTTTCGTAACGAACTAGACTTGATGGCCCACAAGAGAACGATGCACCAGGCGAAACCCACGAATCTTTCGACAAAGGTGAGCTTGCACTGTGCGTATTGTAACGAAAACTGCAAATCGAGAACGGAACTGGAAAACCACATGAAGACGCACTCGCAACACGGTTCGAACGTCGGAAAGCACAAGTGCAACATTTGTGACGAGATCTATCAGTCAGCGATCAGCTTGGCCGAACACAAACTCACTCACTGCAAGGTGGCCACGAGTACCGCGTGCAGTCACTGCAAGATGCCGATCGACAACGAGGAACAGTTCCATCAGCACCTCCAGAAGCACTGCAACCCGGCGAACGCTAACGGCGCCCAAGTGGCGTTCCCCACGTCGTGCATCATATGCAGGCAGACGGTCGTGTCCGACATCGAGGTGAAGGTGCACGTGCACTATCACCTGTCCCGGCTCAAGGAACCGCCGGCCGTGTGCGGCAATTGCAACCGGTACAAGCGGTCGGCGGTGTCGCCTTGCGCCGGCTGCAACCCGGCCAGGAACAGCGCTGCGGAACGGTGTCCGGACTGCGGAGCGGCGTTCGACGCTTTCAGCGCGCTGCAACACCACCTGACCACCGTCCACAGGAAACCGTTTCACTGTTTCAAGTGCAAGATCGGGTTCGAGTCCCAGCAGGAAGCCACCATCCACTTGGGCACGCACCTGGCCACGCTCAACGGGTCCGTGGACGGCATCGAGTGCGGCCTGTGCCCGTGCGTGCTGCCCACGGCCAACAGCCTCCAGACCCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTTCACGTGCTACCTGTGCTCGGCCATATTCACCGCGCCCACCGGACTTCAGGCGCACATGGCCGTCGACCATTCGGCCGAAACGCCGCCGTACGACTGCCCCAGGCCCGGGTGCCAGGCCAAGTTCTTCTTCACCGCCGAGCTGGACAGACACACGCTCGAGCACCAGGGACAGGACGTGCTGGCCAACATGAACTTCTACAAGTACCAGAACAAGCTGATGTCCATCTGCGAAAAGTTGTCGTTCAAGTGCACCGAGTGCTATCAGACCTTCTTGACACAAACCGATTTGCAGTGTCACGTGTACGATCACCACCGGCAGCCGAAGGACGCGCCGCCACCGGCGGAACCGGAAACAAAAGACGTCAAACCGGAAATAAGCGGATGCGCGGTTAACGGTAACGAGGATGAAACATCGCGGCCTTTGGACGGGTGCGAACGGGCCGAGAACCCGGTCAAAGTGGAGGAAGCTGCCGGGGACGAAGTAAGCGTGAAAACGGAACGGCGAGAAAGGGACGACGATGAGGACGACGAAGAGATGATCGACGTGGGAGTGAACAACCGTGGCGAGCTGAAGTCTGGCGCAGACGAAGACGACGCGGACATGCATTGA
Protein Sequence: MPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLLSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKPQEDIFSVISPAAAFPWLNFADSPALALPPYSCRLCMSQFPSVTSLQKHFTTAHYLNSVLNNNIQNNNNNNSSSSNNNNNNNNNNANANTNGCKGGVGVVPLFNWPAMAGTNGYHQHHHRHSTSGGGFLPEETVQTGPTDLSLSSSNRHGGGKHNHTSSGKHKSADDQRNHATSKKSRSSPGHDPSAAVDLQQQQRHVKQEGHNVYDGGKHSQQQQQQSRPAASRPSSLTGVSNHKNNNNNNNNNNNSIHADNNKIQLPCPHCHLAFTHFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEMFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQANLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSTILSHLNRNHRESPNSMCTSPTYISRTADGCIKHPTENGTNACDICEKNDFRNELDLMAHKRTMHQAKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTACSHCKMPIDNEEQFHQHLQKHCNPANANGAQVAFPTSCIICRQTVVSDIEVKVHVHYHLSRLKEPPAVCGNCNRYKRSAVSPCAGCNPARNSAAERCPDCGAAFDAFSALQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMAVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCTECYQTFLTQTDLQCHVYDHHRQPKDAPPPAEPETKDVKPEISGCAVNGNEDETSRPLDGCERAENPVKVEEAAGDEVSVKTERRERDDDEDDEEMIDVGVNNRGELKSGADEDDADMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136337;
90% Identity: -
80% Identity: -