Basic Information

Insect: Pentalonia nigronervosa
Gene Symbol: -
Assembly: GCA_014851325.1
Location: scaffold:2896-7380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.36 41 5.5 0.6 1 17 47 63 47 64 0.92

2 15 0.03 3.5 8.9 1.6 1 23 82 104 82 104 0.95

3 15 0.0049 0.56 11.3 0.1 3 23 116 137 115 137 0.93

4 15 8.7e-07 0.0001 23.1 1.4 1 23 142 164 142 164 0.99

5 15 3.3e-06 0.00038 21.3 1.6 1 21 170 190 170 191 0.97

6 15 5.8e-05 0.0067 17.4 0.4 1 23 198 220 198 220 0.98

7 15 4.9e-06 0.00056 20.8 3.1 1 23 241 263 241 263 0.99

8 15 0.064 7.4 7.8 5.5 1 23 269 291 269 291 0.93

9 15 4.2e-07 4.8e-05 24.1 4.8 1 23 297 319 297 319 0.99

10 15 0.04 4.6 8.5 2.9 1 23 325 347 325 347 0.95

11 15 1.1e-05 0.0013 19.6 1.3 1 23 353 375 353 375 0.96

12 15 9.2e-07 0.00011 23.1 4.0 1 23 381 403 381 403 0.99

13 15 0.00064 0.073 14.1 3.2 1 23 409 431 409 431 0.99

14 15 0.019 2.2 9.5 5.1 1 23 435 458 435 458 0.97

15 15 0.0003 0.035 15.1 1.3 1 23 464 487 464 487 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.36	41	5.5	0.6	1	17	47	63	47	64	0.92
2	15	0.03	3.5	8.9	1.6	1	23	82	104	82	104	0.95
3	15	0.0049	0.56	11.3	0.1	3	23	116	137	115	137	0.93
4	15	8.7e-07	0.0001	23.1	1.4	1	23	142	164	142	164	0.99
5	15	3.3e-06	0.00038	21.3	1.6	1	21	170	190	170	191	0.97
6	15	5.8e-05	0.0067	17.4	0.4	1	23	198	220	198	220	0.98
7	15	4.9e-06	0.00056	20.8	3.1	1	23	241	263	241	263	0.99
8	15	0.064	7.4	7.8	5.5	1	23	269	291	269	291	0.93
9	15	4.2e-07	4.8e-05	24.1	4.8	1	23	297	319	297	319	0.99
10	15	0.04	4.6	8.5	2.9	1	23	325	347	325	347	0.95
11	15	1.1e-05	0.0013	19.6	1.3	1	23	353	375	353	375	0.96
12	15	9.2e-07	0.00011	23.1	4.0	1	23	381	403	381	403	0.99
13	15	0.00064	0.073	14.1	3.2	1	23	409	431	409	431	0.99
14	15	0.019	2.2	9.5	5.1	1	23	435	458	435	458	0.97
15	15	0.0003	0.035	15.1	1.3	1	23	464	487	464	487	0.96

Sequence Information

Coding Sequence: ATGGACGGAGGCAATGATAGATCTTTGTCACTTATGTCTTACGAAGAAAAGATATTAGCCAAAGAAAATATACAACTGATATCAGGAAAAGATATCAAAGAGGATTCTTTGGACAAAAATATAATGTTTCGTAATATTTTTAAATGTCTACGCTGTGAACTAACTTTTGAGAATGAACACCAATTACATAATTGTATAGCATTGCCTCTTAACATAAATAAACAAAAGAAATTAAAACGAGTGTTTAAATGTTCCATATGTGATAAACACTATCTGTTTCCGTCGTTAGCCATGCTTCATTTGCAACGTCATCAAAAATACTTGGAAAGTAAAATAGAGAACATATGTGATATTTGCAAAGCCAAATTTGAATCTGCAAAAGAATTAAAAGACCACTTTGAGATAGAACACAACATTATTCAATTTCAATGTAATATTTGTGAAAAATTATTCAAACAAGCTAGGAACTTACAATATCATATGATGAGTCACTCAGGAGACAAACCATTTCAGTGTGAGTTGTGTGGACACAAATTTACTAGAGCCGATCATTTAGTCAGACATCGGAGAGACAATTGCGATCAAATGGAATTTGAATGTGATTTATGTGGAAAAATTTACAATACTAAAAGAGGTATAAGAACACATTTGAAAGTACACTATGACAGCCCAAAGCCTGGTACCATATGGGCGTTATATACAGAATCTGGGCAAAAATATTACGAGTGTACATTATGTAATAAAACATTTACTCAATTTTCTAGATTCAAGGAACATATACGAATGCATACCGGTGAGAAACCTTTTGAGTGTCAAATTTGTAATAAAAAGTTTACTTGTCATTATAAATTGAAAATGCATGGAGATGTGCATACAAATGATAGACCCTTCAAATGCAATTATTGTGAGCTCAGTTTCAAAAACCGAAGATACCTTAATAAGCACATGCGTAAACATGATGGAATCAAAAAATATCATTGTAGAATTTGTAATAAAGAGTTTCAATGGTACAATAGTCTGAAATATCATATGGCCTCACACTCTGATGATAAACCATATGTATGTATTGAATGCAACAAGTCTTATTCACATCTTAGTACCTTAGTAGCTCATCAACGGACTCATAGCTGTGAAAAAAATTACGAGTGCCATGTCTGCAATAAAAGATTTAGTCATGCTAATACGTTAAGAAATCACATAATCACTCATAGTGAAGATAAGCCATTCAAATGTCATCTGTGTCCAGCACAGGTTTCTACATGTGCATCACTAAAAACTCACTTGAATACACATGGTGGAGATTATCAATGTAGTTTTTGTGGCAGTACTTTTTTCCAATTTTCTAATCTGAGATGTCATGAACGTAAGATTCATGGCAAAACAGATTTCTATGACTGTGGAGTTTGTGAGGAAAAATTCAGTTCAAAACTGCAATTGAAAGAGCATTTAAAGCATGAACACAACATTGAGTTCACAAAAACTGTCACTGTGTATGATGTTGATTTTATACAAGGTCTCTATAATGATTGA
Protein Sequence: MDGGNDRSLSLMSYEEKILAKENIQLISGKDIKEDSLDKNIMFRNIFKCLRCELTFENEHQLHNCIALPLNINKQKKLKRVFKCSICDKHYLFPSLAMLHLQRHQKYLESKIENICDICKAKFESAKELKDHFEIEHNIIQFQCNICEKLFKQARNLQYHMMSHSGDKPFQCELCGHKFTRADHLVRHRRDNCDQMEFECDLCGKIYNTKRGIRTHLKVHYDSPKPGTIWALYTESGQKYYECTLCNKTFTQFSRFKEHIRMHTGEKPFECQICNKKFTCHYKLKMHGDVHTNDRPFKCNYCELSFKNRRYLNKHMRKHDGIKKYHCRICNKEFQWYNSLKYHMASHSDDKPYVCIECNKSYSHLSTLVAHQRTHSCEKNYECHVCNKRFSHANTLRNHIITHSEDKPFKCHLCPAQVSTCASLKTHLNTHGGDYQCSFCGSTFFQFSNLRCHERKIHGKTDFYDCGVCEEKFSSKLQLKEHLKHEHNIEFTKTVTVYDVDFIQGLYND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136321;
90% Identity: -
80% Identity: -