Agos002094.1
Basic Information
- Insect
- Aphis gossypii
- Gene Symbol
- -
- Assembly
- GCA_004010815.1
- Location
- NW:207769-210683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1 79 3.5 0.8 1 16 98 113 98 115 0.89 2 15 0.052 3.9 7.6 2.1 1 23 133 155 133 155 0.96 3 15 0.061 4.6 7.4 2.2 3 19 167 183 166 188 0.93 4 15 4e-06 0.0003 20.6 3.6 1 23 193 215 193 215 0.99 5 15 1.8e-06 0.00014 21.7 1.5 1 21 221 241 221 242 0.97 6 15 4.6e-05 0.0035 17.2 0.4 1 23 249 271 249 271 0.98 7 15 6.6e-06 0.0005 19.9 3.4 1 23 292 314 292 314 0.99 8 15 0.051 3.9 7.6 5.5 1 23 320 342 320 342 0.93 9 15 3.3e-07 2.5e-05 24.0 4.8 1 23 348 370 348 370 0.99 10 15 0.00078 0.059 13.4 1.4 1 23 376 398 376 398 0.96 11 15 1.3e-05 0.00095 19.0 1.5 1 23 404 426 404 426 0.96 12 15 1.3e-06 9.9e-05 22.1 5.7 1 23 432 454 432 454 0.99 13 15 0.00077 0.058 13.4 2.3 1 23 460 482 460 482 0.99 14 15 0.0064 0.48 10.5 4.3 1 23 486 509 486 509 0.97 15 15 0.0021 0.16 12.0 1.2 1 23 515 538 515 538 0.96
Sequence Information
- Coding Sequence
- atggaaatattgtattatttttttcagaatttttcatataaaatattagtttttaatttttttttttcgtttcctTCGACGGTAACTCGGTCGTCTTTACTAATTTGTCATCGATTTATGTCAACTGTCACTACTCCGTCCACGTCATCGAAgatGATGGACGGAgacaatgataaatatttttcaactatatgttatgaaaaaaaattgttagctAAGGAAAATATAGAATTGGTAAcaggaaaaaatgttaaagattttttggataaaaatcaaatttttcataatatttttaaatgtttacgttGTGAACTAACTTTTGAGGATGAACACCAATTCCATAATTGTATAGCATTACCTTTAAACATCAATaaacaaaagaaattaaaacgaGTGTACAAATGTTCACTATGTGATAAACATTATCTTTTTCCATCGTTAGCTATGCTCCATTTAAAACGTCATCAAAAAtgtttggaaaataaaatagaaaacataTGTGATGTTTGCAACACCAAATTTGAAACTACAAAAGAATTAAAAGACCACTGTGAAgagaaacacaatattattcaatttcaatgtaatatttgcaataaattattcaaacaagCCAGAAATTTACACTATCATATGATGAGTCACTCAGGAGACAAACCATATCAGTGTGAATTATGTGGACATAAATTTACTAGAGCCGATCATTTGGTTAGACATCGCAGAGACAACTGTGATCAAATGGAATTTGAATGTGACTTATGtggaaaaatttacaataccaaaagagGTATAAGAACACATTTGAAAGTGCACTATGATAGCCCAAAGCCTGGTACTATATGGGCATTATATACAGAATCTGgacaaaaatattacgaatGCACACTATGTAGTAAAACATTTACTCAATTTTCTAGATTCAAAGAACACATACGAACTCATACTGGTGAAAAGCCTTTTGAGTgtcaaatttgtaataaaaagtttacttgtcattataaacttaaaatgcatGGTGATGTGCATTCTAATGATAGACCTTTCAAATGCAATTATTGTGagcttagttttaaaaatcgaaGGTATCTTAATAAACACATGCGTAAACATgatggaattaaaaaatatcaatgtaaGATTTGTAATAAAGAATTTCAATGGTACAATAGTCTAAAATATCATATGGCTTCACACTCCGGTGATAAACCATTTGTCTGTATTGAATGTAACAAATCTTATTCTCATCTAAGTACCTTAGTAGCTCACCAACGGACCCATGgtggtgaaaaaaattatgaatgtcatatttgcaataaaaaatttagtcattctaacactttaaaaaatcacCTAATTACTCATAGTGAAGATAAACCATTTAAATGTCATCTATGTCCAGCTCAGGTTGCTACTTGTGCGTCATTGAAAACTCACTTGAATACGCATGGTGGAGATTTTCAATGTAGTTTCTGTGGCAGTACTTTTTTCCAATTATCCAATCTGAGATGTCATGAACGTAAGATACATGGCAAAACAGATTTCTATGACTGTGGAGAATGCGAAgaaaaattcaattcaaaattACAAGTGAAAGATCATTTAAGACATGAACATAACATTCAATTTACAAAAACTGTTACTGtatatgatgatgatgattatATACAAGTTCTCTATAATGAGTAA
- Protein Sequence
- MEILYYFFQNFSYKILVFNFFFSFPSTVTRSSLLICHRFMSTVTTPSTSSKMMDGDNDKYFSTICYEKKLLAKENIELVTGKNVKDFLDKNQIFHNIFKCLRCELTFEDEHQFHNCIALPLNINKQKKLKRVYKCSLCDKHYLFPSLAMLHLKRHQKCLENKIENICDVCNTKFETTKELKDHCEEKHNIIQFQCNICNKLFKQARNLHYHMMSHSGDKPYQCELCGHKFTRADHLVRHRRDNCDQMEFECDLCGKIYNTKRGIRTHLKVHYDSPKPGTIWALYTESGQKYYECTLCSKTFTQFSRFKEHIRTHTGEKPFECQICNKKFTCHYKLKMHGDVHSNDRPFKCNYCELSFKNRRYLNKHMRKHDGIKKYQCKICNKEFQWYNSLKYHMASHSGDKPFVCIECNKSYSHLSTLVAHQRTHGGEKNYECHICNKKFSHSNTLKNHLITHSEDKPFKCHLCPAQVATCASLKTHLNTHGGDFQCSFCGSTFFQLSNLRCHERKIHGKTDFYDCGECEEKFNSKLQVKDHLRHEHNIQFTKTVTVYDDDDYIQVLYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134753; iTF_01038660; iTF_01038661; iTF_01305031; iTF_00973224; iTF_01329192; iTF_01304361; iTF_00019571; iTF_00135603; iTF_00942075; iTF_01167901; iTF_01032357; iTF_00463521; iTF_00670424; iTF_01033210;
- 90% Identity
- iTF_00134753; iTF_01305031; iTF_00973224; iTF_01329192; iTF_01304361; iTF_00135603;
- 80% Identity
- -