Pnig013380.1
Basic Information
- Insect
- Pentalonia nigronervosa
- Gene Symbol
- bab2
- Assembly
- GCA_014851325.1
- Location
- scaffold:87754-96576[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 2e-08 34.4 0.0 2 38 427 464 426 469 0.89 2 4 1.1e-11 1.3e-08 35.0 0.1 2 39 481 518 480 521 0.94 3 4 2.3e-16 2.9e-13 49.9 0.0 3 45 537 580 535 580 0.97 4 4 6.8e-17 8.4e-14 51.6 0.1 1 43 587 630 587 632 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAATGGCCAGCACTACTGTCTGCGATGGAACAATTATCAATCAAATATGACTTCTGTGTTTCATCAGCTTCTTCGAAATGAATCGTTTGTCGATGTTACACTTGCTTGCAATGAGAGCACACTTAAAGCACACAAAGTTGTCTTATCAGCCTGTTCATCATACTTCCAAAAACTTTTGATGGATAACCCATGTAAACATCCAACCATCATACTGCCTTATGATGTCTGTTTTAACGATCTTAAGTTCATCATAGAGTTTGTGTATCGGGGTGAGATCGATGTGTCTCAAGCTGAATTACAATCTCTTTTGAAGACGGCAGACCAGTTAAAGATTAAAGGACTATGTGAAGTGCCTGAAGATGAACGCGACACATCTATTGTCGCCGAAGTAACTCCTTTGGGTCCATTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAACGCAGAACTTCTCCTTATTCAAAAAAATTAAGCCCCAATCAAATTCAGCAGGATCAGTTTAATCGAAGTTATTATCGAATTGAACAATCGGGTTTTGCGCCTATTAGTGTTGATCAAGAAAACAAGTCTATAAATACTATCCATTGCATGACTGTAGCAACATCAACCGAAGATGATGAGAAAGAGATGAAGTCAACACTAACAGATTTACCAGTGGTTATACTAGAGCCACATCCTACACTAAGTTTACAAGCACAACAACAGCCCCAGATAGTTCACATACCTATACCACAACAACAACAACAACAACAACAAATGGGCCATGTAACACAACATGCAAATCAACCACAGTTGCAACAAGCTGAAGTTCAAACTCATTCACAAATGATTATTACAACAGGTCCAGTTATGACAGTAAATGAAGCTGACATTACGCCTGATATACAGCCTGTTGGACCAAGGGCGACACCAGTACCAGTAAAAAATAACCCAAGTCCCTCATCAACTCCTACACATAGAGACATGGCTGTTGGTACATCATGTTCAAATGATATGATGAGAAGTGATGGAAGTGAAGGAAAATTTGAAAGTACTAAATTTGAAACACTTCGTACTATTGATCAATCATCGGATGCAATTGGAATAGATAGACAACATTCTAATGACCGTAATATAAACGATGAAGATAATTCAATGCATACAATGATGATAACACCTGAACTTTTGGGCTTATTACCAAATTCTTCTAATACAGGAGATGTCAGTGAAGATAGTTCTAGTAACAATATTAACAAACAGTATGGTACAAATGGTGGCAAAGGATGGACAGCTGATGACATGGAAAATGCTCTAGAAGCATTGCGTTCACATAATATGTCTTTAACCAAAGCATCCATAACATTTGGGATTCCTTCTACAACATTATGGCAGCGGGCTCATCGAGCTGGTATAGATACTCCCAAAAAAGACGGACCTGCTAAATCTTGGAACGATGAAGCTTTAAACGTTGCATTAGATGCTCTGCGCACTGGCACTATTTCGGCAAATAAAGCTAGTAAAGCTTATGGCATACCTAGTAGTACATTATACAAGATTGCGCGGCGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCGGCTCCAACTTCTTGGGGTCAGGAGCAGTTAGACCAGGCATTGCATGCCATACGGACTGGGCAAACGACTGTGCAACGAGCTGCAGCTGACTACGGTATACCTTCTGGTACACTGTATGGCCGGTGTAAACGTGAGAAAATTGAATTGTCCCGCAGCAATCCTACCCCATGGTCTGAGGACGCTATGATGGAAGCTCTGGAGTCTGTGAGATTAGGTCATATGAGTATTAATCAGGCAGCTATACATTATAATCTACCATATTCTTCGTTGTATGGACGTTTCAAAAGGGTGAAATATGGTGCTGGACATCCAGACGATGATTGTGACGATATGATTGACTCAGATACACAGAGCGAACAACAGCACATCCAACAACAACAACAACAGCAGCAGCAGCAGCAAGCAAATCAGCAAGTACAGTCTACACCAGTGTCCCAAATAATGCTGGTGCAATATCCAGCGCCACAGATTCAAATGTACCAACATCCAACTCATTCAACCACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQFNRSYYRIEQSGFAPISVDQENKSINTIHCMTVATSTEDDEKEMKSTLTDLPVVILEPHPTLSLQAQQQPQIVHIPIPQQQQQQQQMGHVTQHANQPQLQQAEVQTHSQMIITTGPVMTVNEADITPDIQPVGPRATPVPVKNNPSPSSTPTHRDMAVGTSCSNDMMRSDGSEGKFESTKFETLRTIDQSSDAIGIDRQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNTGDVSEDSSSNNINKQYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNVALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSEQQHIQQQQQQQQQQQANQQVQSTPVSQIMLVQYPAPQIQMYQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01167796;