Pnig013413.1
Basic Information
- Insect
- Pentalonia nigronervosa
- Gene Symbol
- foxn4
- Assembly
- GCA_014851325.1
- Location
- scaffold:43247-45009[-]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-36 1.1e-32 112.5 0.1 2 86 233 319 232 321 0.93
Sequence Information
- Coding Sequence
- ATGAAAAGTGATTATGATCGTGTATTATCAAATAATAGTTTTAACTATGATGATTCATTGTCATTGAATGATGACAACATGATGTCTATGGTGGATCCGCTCAATTCTGGACTATGGATGAATTCTGATTCAGATTATCACCATCATTTAGATTTAATGGAAGGGGACCTAGAATCAGCTATCATGGTTAATCCTAATTCTGTAATACCATCATCTGCAGCAGCTGCAGAAATTAAAGTTAAAGAAGAACCAGCTACTGAACCAATTTTACCAAAAACATACCTGCCTATTACTATTAAAAAAGAAAAGCTTGATCTAGTAAACTCTCGTGAACTCATGATTAAGTTTCCGGAAATTATTCCAGAGTGTATAAATATAAAATCTGAAAAAATGCCATTAGATGTAAATAAAGTGGAAGAACTCAAACCTATACCAAAAGCTATAAGGTTGTCTGATTTGTTGAGTCAAACATCAAGTACTGGCCACCAGAAGACTGAATTAATGACTGTACGTGTAACAATGCCATCTGCCTTGCCCTCCTTAAAGACAACTGTAACTACTAGAACAGTTCCCATTTCTTTTGTTAATAATACCATTAACGGGCATTACAAAATTGTTAGGCCTAAGCAACAAATTAAACCGATTCAATCAAGAATCAATGGCAACAAATTTAATGAAAGTATGGGTCTTTATCCAAGACCTACATATTCCTACTCATGCTTAATTGCAATGGCATTAAAAAATTCAAGTTCTGGATCTTTACCAGTTTCAGAAATTTACAATTTTATGTGCAAACATTTTCCGTATTTTAAGACTGCCAGTAGCGGATGGAAGAACTCTGTTCGACACAACCTTAGTTTGAATAAGTGTTTTGAAAAGATTGAAAAACCAATTGGTAGTACAGGTGCACCAAGGAAGGGATGTTTGTGGACAATGAATCCAAGCAAAATATCAAAAATGGATGATGAGATGCAAAAATGGTCACGTAAAGATCCTTCTGCAATTAGACGTGCAATGCTCAATCCTGAACATTTGGATTTACTGGAACGTGGCGAGATGAATGAATGTTATGATCGGCGTGACAGTTATTACTTTGATGATGAAGAAGAGGAAGAAGAAGAAATAATCAGTCAAGAAATGACATCTGAAGATGACAGAATCAGCGATGTTGAGGAAGAATCGGATAATGAGTCAAGAATTGATAAAGATGATTCACCATATCAGTTAATAACATTTGGCCTGGATGATTTGGCTAACCTTAATGACCTTGCCAATGATTTTGACGATGAAGAAATTGAAGATAGTTCAAATGATGGCAGCTTCGGCATTGAAGCATCCGAGTATAAAACAAACTTTGACGATTTGATATCTGTTCAAGATATGCCTATGACATATGTAGTTCAGCCCCCAAATAAGACTGTAATCAACAATAAACGGCCGTATCAACAACCTTTAATTAAGGGTAGTTATGTGTTGACTAAAAATGTTGCATCAAGTGTGCCAAGTCCAAAGCGAAAATTCATCAGTAGGCCTGTATCAATATTAAGAAATATTTAA
- Protein Sequence
- MKSDYDRVLSNNSFNYDDSLSLNDDNMMSMVDPLNSGLWMNSDSDYHHHLDLMEGDLESAIMVNPNSVIPSSAAAAEIKVKEEPATEPILPKTYLPITIKKEKLDLVNSRELMIKFPEIIPECINIKSEKMPLDVNKVEELKPIPKAIRLSDLLSQTSSTGHQKTELMTVRVTMPSALPSLKTTVTTRTVPISFVNNTINGHYKIVRPKQQIKPIQSRINGNKFNESMGLYPRPTYSYSCLIAMALKNSSSGSLPVSEIYNFMCKHFPYFKTASSGWKNSVRHNLSLNKCFEKIEKPIGSTGAPRKGCLWTMNPSKISKMDDEMQKWSRKDPSAIRRAMLNPEHLDLLERGEMNECYDRRDSYYFDDEEEEEEEIISQEMTSEDDRISDVEEESDNESRIDKDDSPYQLITFGLDDLANLNDLANDFDDEEIEDSSNDGSFGIEASEYKTNFDDLISVQDMPMTYVVQPPNKTVINNKRPYQQPLIKGSYVLTKNVASSVPSPKRKFISRPVSILRNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169673;
- 90% Identity
- iTF_00972865; iTF_00018831; iTF_00940188; iTF_01031768; iTF_00463171; iTF_00184420; iTF_01037557; iTF_01032696; iTF_00135130; iTF_00134054; iTF_00135967; iTF_01328426; iTF_01303998; iTF_01305358; iTF_01304671;
- 80% Identity
- -