Pmus023683.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829124.1:9168764-9170877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.022 1.6 9.9 1.1 1 23 50 72 50 72 0.95 2 16 0.019 1.4 10.2 0.1 2 23 100 122 99 122 0.95 3 16 0.015 1.1 10.4 1.5 2 23 143 165 142 165 0.96 4 16 0.001 0.076 14.1 3.9 1 23 170 193 170 193 0.97 5 16 0.039 2.9 9.1 2.4 1 23 197 220 197 220 0.86 6 16 0.021 1.5 10.0 0.2 2 23 223 245 222 245 0.96 7 16 0.91 68 4.8 0.1 2 20 251 269 250 271 0.92 8 16 0.00044 0.032 15.3 3.8 1 23 320 343 320 343 0.96 9 16 0.11 8.4 7.7 0.1 2 23 372 394 371 394 0.95 10 16 0.00061 0.045 14.8 0.2 1 23 416 439 416 439 0.96 11 16 0.00011 0.0083 17.2 0.5 1 23 444 466 444 467 0.95 12 16 5.5e-05 0.0041 18.1 1.7 1 23 474 497 474 497 0.95 13 16 0.0075 0.56 11.4 0.4 1 23 502 525 502 525 0.94 14 16 0.00042 0.031 15.3 3.0 1 23 529 552 529 552 0.97 15 16 0.0011 0.079 14.1 1.4 2 23 559 580 558 580 0.97 16 16 0.033 2.5 9.4 1.6 1 23 586 608 586 608 0.96
Sequence Information
- Coding Sequence
- ATGGACAAATTAGTACTGATTCAAATCAGACAGGCCACGTATTCGGAAACAGAGTCATCAAAGACAAGTGCTAATTCTCTCAGAAGGAGGAACCTGCTTATTCTATTCAACAACACTACATTGATACCGTTTAAATGGCGAGGCAAATACCTGTGCTTCTATTGCGGAATTGACATAGAGAGTCATTCACAACTCCGAAATCACACAGAGAGCCACGGACTCTGCTCTGACAGAGATCGAGCTATAAGACTCGTGAAATCGGCAGATTGTGAAACTAAAATTGATGTTTCTTATATAACTTGCAAACTATGCACCCAGTCTTTCGTATATCTGGATGATATCGTCAACCATTTGATTTCTGCACACGATTTGGCTTACTCTAAACAAGCTAGTTTGATGTTAACGTCATATAGGCTTATAGATCTACAATGCCTACTTTGTGAACAAAGTTTTGACTATTTCCCGAAACTTGTATCTCATATGAACACTTGCCATCCTAACGACAGTTTCTCTTGCGCTGAATGCGAGCACACGTTCAATAAAAAGCGCGATTTAAATACACACACGAGGAATTACCACAGAAAGGAGTACAAGTGTAGCAAATGCAACGAAGTTTTCGCTTCTAATGTATCGATGAGATTCCATAGGCTACATTCGCATCCTTCCAGTTGTAATATATGCTACGAAATATTTTCGTCGGATGTCGAACGGCTCAAGCATATGAAAATTGAACACACGGCTGACCAAGTCCAATGCGGATTCTGCCAACAAGTTTTATCCACAAAGCAGGCAGTTCTGAGACATGCTTCTAAATGTACCGCAAAAAGAGATCCTACTATTGAAACTATCATTATAGGTGATGAAGATAAGAAAATAGCAACAAAAGATCTTAGAAATAGCATCGCTGCCATCATCAACATGTCTTCTGCAATACCGTTTAAATTCTTCATGAGCAAATTCCGATGTTTCTATTGCTCGAAAGATTTTTCAACTTGTGACAGTTTGAAAGAGCATACAATCATTCAGCACCCTCAATGCGATGTAACTGATAAATGTATGAAACTCCGCAACAGATACGAcggaaataaaatcaaaattgatACAGCCTCTCTTTCTTGTAAACTGTGTTATGAATCGTTACCCGATTTGAACACTTTAATTGACCATTTGACGACCGAACATAAAGTCCAATGTAACAAATCTGTCGAAAATCACTTACAGTCTTTCAAACTCATTAAAAATAACTATCCATGTCCGTTGTGCGATGAGGTTTACCGATATTTCGGGTTGCTTCTCAAACACGTCAGTAAGAGCCATACAGGGAATAAATACATCTGTGTGTTCTGCGGCCAACCGTTTAGGACCGACCCGAATCTTCGGGCTCACGTAATGAGACATCACAGAGTGTCTACCAATAGGTATCAATGTAATACTTGTGATTGTATTTTCACTACATACGCTAATTTAAAGATTCATTTGGGAAGGGATCACGGTGTCAAAATGTTCAAATGTATCGAATGCCCGGATAAATTTTCGACGCAATATTGGATGCAGCGCCACATGCTTCTCGTACACGGTGAAGGTCATAAATGCTCTTATTGCGACAAAGCTTTTATAAAGTATTCTTTTATGGTGAATCATGTTAGACGGCTGCATCTAAAAGAGAAGAATGTCAAGTGTAAAATATGCTCTGAGAGCTTTTTCGATCGGCAGAGACTGAAGATGCACATGGTGAAACATGTTGGAGAAAGAAATTTCCATTGCGATATTTGCTCGAAGAAGTTTCTTTGGAAGCGTAATCTTAGGGCGCATATTGCCTCACATGTTAGGAATGCGAACGCTCACGGTGGTATCACCtaa
- Protein Sequence
- MDKLVLIQIRQATYSETESSKTSANSLRRRNLLILFNNTTLIPFKWRGKYLCFYCGIDIESHSQLRNHTESHGLCSDRDRAIRLVKSADCETKIDVSYITCKLCTQSFVYLDDIVNHLISAHDLAYSKQASLMLTSYRLIDLQCLLCEQSFDYFPKLVSHMNTCHPNDSFSCAECEHTFNKKRDLNTHTRNYHRKEYKCSKCNEVFASNVSMRFHRLHSHPSSCNICYEIFSSDVERLKHMKIEHTADQVQCGFCQQVLSTKQAVLRHASKCTAKRDPTIETIIIGDEDKKIATKDLRNSIAAIINMSSAIPFKFFMSKFRCFYCSKDFSTCDSLKEHTIIQHPQCDVTDKCMKLRNRYDGNKIKIDTASLSCKLCYESLPDLNTLIDHLTTEHKVQCNKSVENHLQSFKLIKNNYPCPLCDEVYRYFGLLLKHVSKSHTGNKYICVFCGQPFRTDPNLRAHVMRHHRVSTNRYQCNTCDCIFTTYANLKIHLGRDHGVKMFKCIECPDKFSTQYWMQRHMLLVHGEGHKCSYCDKAFIKYSFMVNHVRRLHLKEKNVKCKICSESFFDRQRLKMHMVKHVGERNFHCDICSKKFLWKRNLRAHIASHVRNANAHGGIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00795060; iTF_00636766;
- 90% Identity
- iTF_00636766;
- 80% Identity
- -