Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: -
Assembly: GCA_945859575.2
Location: OX243854.1:19140120-19142039[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.81 85 4.9 0.7 1 23 70 92 70 92 0.93

2 16 0.053 5.5 8.7 0.7 2 23 120 142 119 142 0.95

3 16 0.0055 0.57 11.8 1.8 2 23 163 185 162 185 0.96

4 16 0.00045 0.047 15.2 2.1 1 23 190 213 190 213 0.97

5 16 2.6 2.7e+02 3.3 1.5 1 23 217 240 217 240 0.88

6 16 0.077 8.1 8.2 1.6 2 23 243 265 242 265 0.95

7 16 0.68 72 5.2 0.2 2 20 271 289 270 291 0.92

8 16 0.0006 0.063 14.8 3.2 1 23 340 363 340 363 0.93

9 16 0.062 6.5 8.5 0.0 2 23 392 414 391 414 0.96

10 16 0.0006 0.063 14.8 0.2 1 23 436 459 436 459 0.96

11 16 0.00024 0.025 16.0 0.1 1 23 464 487 464 487 0.96

12 16 2.3e-06 0.00024 22.4 1.6 1 23 494 517 494 517 0.95

13 16 4.9e-06 0.00051 21.4 0.9 1 23 522 545 522 545 0.98

14 16 0.00039 0.041 15.4 3.1 1 23 549 572 549 572 0.97

15 16 0.0049 0.52 11.9 1.2 2 23 579 600 578 600 0.97

16 16 0.033 3.4 9.3 1.6 1 23 606 628 606 628 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.81	85	4.9	0.7	1	23	70	92	70	92	0.93
2	16	0.053	5.5	8.7	0.7	2	23	120	142	119	142	0.95
3	16	0.0055	0.57	11.8	1.8	2	23	163	185	162	185	0.96
4	16	0.00045	0.047	15.2	2.1	1	23	190	213	190	213	0.97
5	16	2.6	2.7e+02	3.3	1.5	1	23	217	240	217	240	0.88
6	16	0.077	8.1	8.2	1.6	2	23	243	265	242	265	0.95
7	16	0.68	72	5.2	0.2	2	20	271	289	270	291	0.92
8	16	0.0006	0.063	14.8	3.2	1	23	340	363	340	363	0.93
9	16	0.062	6.5	8.5	0.0	2	23	392	414	391	414	0.96
10	16	0.0006	0.063	14.8	0.2	1	23	436	459	436	459	0.96
11	16	0.00024	0.025	16.0	0.1	1	23	464	487	464	487	0.96
12	16	2.3e-06	0.00024	22.4	1.6	1	23	494	517	494	517	0.95
13	16	4.9e-06	0.00051	21.4	0.9	1	23	522	545	522	545	0.98
14	16	0.00039	0.041	15.4	3.1	1	23	549	572	549	572	0.97
15	16	0.0049	0.52	11.9	1.2	2	23	579	600	578	600	0.97
16	16	0.033	3.4	9.3	1.6	1	23	606	628	606	628	0.96

Sequence Information

Coding Sequence: ATGATCCTTTACAAGCAAGTTATAATCGACAATACTCGTACTACCCTCCTTGCACTATCTTTGTTGCTCAAAAAATACAATAGAGAAAATTTCTTTTCAGATACGGAAAGAGAGCCATCTAAGAAAAGTGCTAATTATCTAAGGAGGCGGAACCTGCTAATTCTATTCAACAATACCACGTTGATACCATTTAAATGGCGTGGCAAATACTTATGTTTCTATTGCGGTGATGACGTAGACAGTTTTACGCAATTGAGGAAGCATACTGACAGTCACGGCCTCTGCTCAGATAAAGATAGAGCTATGAGACTCGTCAAATCAGCGGATTCGGAAACCAAAATTGACGTTTCATATATCGTCTGCAAGCTATGCTCGCACACGTTCGAATTTCTTGACGATATTACGAACCATTTGATCTCGAATCACAATTTACCTTACAATAAACACGCTAAACTAATGATAACCGCTTATAGGCTTATAGATCTACAATGCTTGCTTTGTGATAAAAAATTTGACTATTTCCCGAAACTAGTTTCTCATATAAACACTTGTCATCCAAGCGAATGTTTCTCTTGCACGAAATGTGACCAAATGTTTAATAAAAAGCGAGATTTAGGCACTCATGTTCGAAACTATCACAGGAAAGAATACACTTGTATCAAATGCGAGGAAACTTTCGATTCGAATGTCGCGCTTCGATTCCACAGATTGCATTCTCATCCTTCCACTTGCAATATCTGTTTCCAAACATTCTCCTCAGATATGAAACGTTTAAATCATATGAAAAACGAACACACATCCGATCAAGTTCAATGTGGATTTTGCCAGCAAACTTTGTCTACAAAGCAAGCAGTCCTACGTCACGCGTCCAAATGTGCTGCTAACAAAAATTCAGCCATCGAAACCATCATTGTAGATGATGAAGAAAAGAAAATGCCGACAAAAGATCTTAGGAATAGTATAGCTACAATAATAAATATGTCTACTGCGGTTCCGTTTAAATTCTTCATGAGTAAATTCCGATGTTTTTACTGCTCCAAAGATTTCACGACTTGTGACAGTTTGAAAGAACACACGGTCATAGTGCATCCTCAATGTGACGTTAGTGACAAATGTATGAAATTGCGTAATAGATATGACGGGAACAAAATCAAAATTGATACCGCGTCTCTATCTTGCAAACTGTGCTACGAAACTTTGGTAGATGTGAGCGCTTTGATCGAACATTTGATCACGGAACATAAAGTACAATGTAATAAGTCCGTTGAAAATCATTTACAATCATTCAAATTAATTAAGAATAGCTATCCTTGTCCGTTATGCGATGAAGTGTACAGATATTTTGGTTTATTACTCAAACATGTCAGTAAAAATCATACGGGTAATAAGTATATTTGCGTTTTTTGCGGTCAACCTTTTAGAACTGACCCGAATCTCCGCGCTCACGTCATGAGGTATCACAGAGCATCGACCAACAGATACGAGTGTAACCATTGTGATTTGGTATTCTCATCATATAGCAACTTAAAAACTCATTTGGGAAGGGATCATGGCGTCAAATTGTTCAAGTGTGTTGAGTGTCAGGAAAAGTTTTCGTCTCAGTATTGGATGCAACGCCACATGCTCACTGTGCACGGTGAGGGGCACAAATGCACTTACTGCGACAAAGCTTTTATTAAATACTCCTTTATGGTGAACCACGTCAGACGGTTACATTTGAAAGAAAAGAACGTCAAATGTAAGATATGTTTAGAAAGCTTCTTCGACCGGCAGAGGCTCAAAATGCACATGGTCAAACATGTCGGCGAAAGGAATTTCCACTGTGATATTTGCTCCAAAAAGTTTTTATGGAAGAGGAATTTGAGGGCTCATATCGCATCTCATGTTAGGAACGCGAACGCTCACGCTAGCGTCACCTAA
Protein Sequence: MILYKQVIIDNTRTTLLALSLLLKKYNRENFFSDTEREPSKKSANYLRRRNLLILFNNTTLIPFKWRGKYLCFYCGDDVDSFTQLRKHTDSHGLCSDKDRAMRLVKSADSETKIDVSYIVCKLCSHTFEFLDDITNHLISNHNLPYNKHAKLMITAYRLIDLQCLLCDKKFDYFPKLVSHINTCHPSECFSCTKCDQMFNKKRDLGTHVRNYHRKEYTCIKCEETFDSNVALRFHRLHSHPSTCNICFQTFSSDMKRLNHMKNEHTSDQVQCGFCQQTLSTKQAVLRHASKCAANKNSAIETIIVDDEEKKMPTKDLRNSIATIINMSTAVPFKFFMSKFRCFYCSKDFTTCDSLKEHTVIVHPQCDVSDKCMKLRNRYDGNKIKIDTASLSCKLCYETLVDVSALIEHLITEHKVQCNKSVENHLQSFKLIKNSYPCPLCDEVYRYFGLLLKHVSKNHTGNKYICVFCGQPFRTDPNLRAHVMRYHRASTNRYECNHCDLVFSSYSNLKTHLGRDHGVKLFKCVECQEKFSSQYWMQRHMLTVHGEGHKCTYCDKAFIKYSFMVNHVRRLHLKEKNVKCKICLESFFDRQRLKMHMVKHVGERNFHCDICSKKFLWKRNLRAHIASHVRNANAHASVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01166964;
90% Identity: -
80% Identity: -