Pmus023676.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- PLAGL2
- Assembly
- GCA_963691645.1
- Location
- OY829124.1:9091638-9095324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.61 46 5.4 1.4 1 23 117 140 117 140 0.93 2 18 0.0036 0.27 12.4 0.4 1 23 211 233 211 233 0.98 3 18 0.0022 0.16 13.1 4.4 1 23 237 259 237 259 0.98 4 18 0.75 55 5.1 3.7 1 23 264 287 264 287 0.86 5 18 0.027 2 9.6 0.3 3 23 296 317 295 317 0.94 6 18 1.1e-05 0.00085 20.3 2.3 2 23 325 347 324 347 0.95 7 18 0.0002 0.015 16.4 2.5 1 23 353 375 353 375 0.98 8 18 0.00028 0.021 15.9 0.4 1 21 381 401 381 402 0.97 9 18 0.014 1 10.6 0.0 1 23 449 472 449 472 0.93 10 18 0.031 2.3 9.5 0.1 2 23 499 521 498 521 0.94 11 18 0.00059 0.044 14.9 1.6 2 23 544 565 543 565 0.97 12 18 0.016 1.2 10.3 0.2 1 23 569 591 569 591 0.94 13 18 0.064 4.8 8.5 6.8 1 23 596 619 596 619 0.96 14 18 2 1.5e+02 3.7 3.6 2 23 627 649 626 649 0.81 15 18 0.00029 0.021 15.9 4.9 2 23 657 679 656 679 0.96 16 18 0.00063 0.047 14.8 1.2 1 23 685 707 685 707 0.98 17 18 1.1e-05 0.00085 20.3 1.3 1 23 713 735 713 735 0.99 18 18 0.00018 0.013 16.5 4.3 1 23 741 764 741 764 0.97
Sequence Information
- Coding Sequence
- ATGTTCACATATAGGTATACGAAAAATAATTCAGCTATAGTTAAATTTGATACAAATAGAACTACAGAGAGGGTGGGTGTCGGCTGCAATACAGACATTAAAATAGAGCCGGAAGTAAGTAAGCTACTGAATTTACTCAAAAAGCCGACATCAGTTACAAAGAAAGATAACAAACACGATTGGAGTGTTACCATATCAAAGAAAGCCCACAAAGCCAAGGTATTTGACGGATTAGTGGCTATTGAGACGGACTTCATTCGCAAGGAGATCACAAAGCATTTACACAATATAAGGACCATCTTATTACATTCCAATGCTACACCGATAAAATCGTACAGTGGTATAGGATATACTTGCTGTTTTTGCTCCGAGCAATACCCTATACCTAAGGATTTAAAAGAACATACCCTAGACAATCATGACAAAACTACAAAAGAAAAGTTCATGCAAGGATGTTCCTTGTCAACATATGTCGTGAAACTAGATATCACCGGTTTAAGATGTGAACTTTGCTGTAATGATTTTGaagatttacaaaaatatgttgaaCATTTACAAAGTGATCATAACAAGAAAATTTATACAGATATAAATAATCATATACTGCCTTTCAAATTTGAAGGTGATGGTTTTACTTGCGTAATTTGTGCCAAAAATTTCGAAAGGTTCAAATTGATACAGGAACACATGAACGTACACTATACGAACTATACTTGCGAGGTTTGTGATTCTCATTTTGTTAACCACAGAACTCTTAAGAGTCACATATCTAGACACAAACAGGGCGAATTCAATTGCAGCTTCTGTCCAAAAGTTTTTGACACCCACAACAAGAAATCAAGCCACGAGAAATTTGTCCACACAGGTGATCAACGGAGAAATATATGCCCGTACTGTAAAGAAAAATTTGTAAGTTACGCTAAGAAAAACGAACATATGGTAGTGAAACATGGAGTAGAACCTCTCGTGCTGAATTGTAAAGCTTGTGATAAAAAGTTTACACGACGAGATAAACTGACCAGGCATATAAAGAGAGATCACTTACTAGAAAGAAGATTTGAGTGTGACCATTGTGATATGAAATTCTACGGAAGGAAGGATTTGAATACGCACATGGTGAAACATACAGGAGTGAAACAGTATAGGTGTGAAGTGTGTTTAAAGGCGTTTGGGAGAAGTCATACGTTGAAGGAGCATTTGCGTGCTCGACGTAACGCCATCGAAACGGATAGCGAAAAACTAATGAAACCCAGGATATATGAGTTGGAAAAGCACCGCAGTAACGTACGAATGATCCTTCAATACTCAAACGCCACCCCCATTCGATGTATGGGAGGCATCGGTTACGCCTGCAGCTTTTGTGGAGATGAGTACCCAGATCCCGCAGATTTAAAAAGGCATACCATCGAAACACACGATGATAAggccaaattaaaatttatggcAGACAAAATGATGTTCTCTTATCTAGTTAAACTTGATATAACAGACCTTCGCTGTACAATATGTGATATGAAAATAGATACTTTGGATCTTTTAACAGACCATCTCCTCAATGTGCACGGCAAACCACTTCACACGGATATCAAAAGTCACATAATGCCTTTTAAATTTAACGATGAAGTGTTAACCTGTATGTTCTGCCCAAATGTATTcaacaaattcaaaaatctaCAACAACATATGAATACCCATTTTAGAAATTTTGTTTGCGAATACTGTGACGCCGGTTTTATTAACCGACATATTCTTACTGCACACACCGAAGCACATAAACTCGGATCATTTAAATGCGATCACTGCTCAAAAGTATTCGATACtcatagaaaaaagaaaagtcacGAGAAATCCGTACATATACACGCGAATTTACTCTGCAAATGTGGGTATTGTAACTTAAAATTCACAAATTACAAAAGGAGAGACAATCATTTGGTTAAAGTGCATGGCGTACTTTTAAAAACTGTTAAATGTCATGCCTGTGATAAGTCGTTTCATAGCAAAAGCTCCTTGACAATACACACGAAACGAGACCACTTAATGGAGCGAAGGTTTAAGTGTAATCAATGTGATATGAACTTTTTCGGATCCAATGAGCTTAAGTTACACATGGTGAAGCATACAGGCTTGAGAGAATTCAAGTGCGACGTGTGCTTGAAGTCTTATGGGAGGAAGAAAACTTTGACAGAGCATATGAGAATACACAATGATGATAGGCGATTTAAATGTGAACATTGTGGGCAAGCGTTTGTTCAAAAGTGTAGCTGGAAAGGGCATATGAGGAATAGGCACGGGGAACTGGTCTGa
- Protein Sequence
- MFTYRYTKNNSAIVKFDTNRTTERVGVGCNTDIKIEPEVSKLLNLLKKPTSVTKKDNKHDWSVTISKKAHKAKVFDGLVAIETDFIRKEITKHLHNIRTILLHSNATPIKSYSGIGYTCCFCSEQYPIPKDLKEHTLDNHDKTTKEKFMQGCSLSTYVVKLDITGLRCELCCNDFEDLQKYVEHLQSDHNKKIYTDINNHILPFKFEGDGFTCVICAKNFERFKLIQEHMNVHYTNYTCEVCDSHFVNHRTLKSHISRHKQGEFNCSFCPKVFDTHNKKSSHEKFVHTGDQRRNICPYCKEKFVSYAKKNEHMVVKHGVEPLVLNCKACDKKFTRRDKLTRHIKRDHLLERRFECDHCDMKFYGRKDLNTHMVKHTGVKQYRCEVCLKAFGRSHTLKEHLRARRNAIETDSEKLMKPRIYELEKHRSNVRMILQYSNATPIRCMGGIGYACSFCGDEYPDPADLKRHTIETHDDKAKLKFMADKMMFSYLVKLDITDLRCTICDMKIDTLDLLTDHLLNVHGKPLHTDIKSHIMPFKFNDEVLTCMFCPNVFNKFKNLQQHMNTHFRNFVCEYCDAGFINRHILTAHTEAHKLGSFKCDHCSKVFDTHRKKKSHEKSVHIHANLLCKCGYCNLKFTNYKRRDNHLVKVHGVLLKTVKCHACDKSFHSKSSLTIHTKRDHLMERRFKCNQCDMNFFGSNELKLHMVKHTGLREFKCDVCLKSYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNRHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636760;
- 90% Identity
- iTF_00636760;
- 80% Identity
- -