Pmus023626.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829124.1:8697603-8703433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00091 0.068 14.3 0.6 1 23 5 27 5 27 0.94 2 23 0.22 16 6.8 0.4 1 23 100 122 100 122 0.97 3 23 0.0015 0.11 13.6 0.2 1 23 126 148 126 148 0.95 4 23 0.069 5.1 8.4 0.4 1 23 153 176 153 176 0.91 5 23 0.0015 0.11 13.6 1.8 1 23 182 205 182 205 0.93 6 23 0.064 4.7 8.5 0.2 1 12 212 223 212 227 0.87 7 23 0.048 3.5 8.9 1.4 1 23 332 355 332 355 0.96 8 23 0.0089 0.66 11.2 1.1 2 23 380 402 379 402 0.95 9 23 0.28 21 6.4 0.1 1 23 426 448 426 448 0.96 10 23 0.00049 0.036 15.1 0.2 1 23 452 474 452 474 0.98 11 23 0.00034 0.025 15.6 0.7 1 23 479 502 479 502 0.96 12 23 0.0049 0.37 12.0 0.3 2 23 509 531 509 531 0.93 13 23 0.15 11 7.3 4.2 1 21 538 558 538 559 0.91 14 23 0.061 4.5 8.5 0.1 1 23 743 766 743 766 0.93 15 23 0.019 1.4 10.1 0.9 2 23 792 814 791 814 0.94 16 23 0.0073 0.54 11.4 0.3 1 23 836 858 836 858 0.97 17 23 1.8e-05 0.0013 19.7 0.3 1 23 862 884 862 884 0.99 18 23 0.00027 0.02 15.9 0.3 1 23 889 912 889 912 0.95 19 23 0.0002 0.015 16.4 0.9 2 23 919 941 919 941 0.97 20 23 9.4e-05 0.007 17.4 1.1 1 23 948 971 948 971 0.98 21 23 0.0019 0.14 13.3 3.0 2 23 978 999 977 999 0.96 22 23 0.00029 0.022 15.8 2.5 1 21 1005 1025 1005 1027 0.94 23 23 7.8e-05 0.0058 17.6 0.2 2 23 1031 1053 1031 1053 0.96
Sequence Information
- Coding Sequence
- ATGAAGAATTTGTATATTTGCTTTTACTGTGATCAGCAATTCACAGATCCTGTCAAACTTAGAAACCATAATCTAGAACATTCTCTATTGAAATATTCTCAAGTAAAACATGCCATGTCAAAACTGAGGAAATACGAATTAGTGAAGGTTGATGTTACGGATGTCAATTGTAGACTCTGTGAGGACGAAATTCCTGATTACCCGTCGTTAAAATGGCATTTGCTTGAGAAGCATAACAAACCTTTAGACCCTAAATCTGCTGATGGTATGTTACCATTCAAAGTTACTGCTGACGAGTTTCAATGTGTGTTATGTATCGAAAAATATGCGGAATTCAAGTCATTAAATCAACACATGAATGTACATTTTCAGAACTTCATTTGCGAGCAATGTGGTACAGGATTCGTTACGCCAGAGCGTTTGAGAACCCATGCGTTTTCACACGAAACTGGCTCCTTCCCTTGTGAAAGCTGCGACAAAATATTCCGTTCTACAAACGCAAAGAACGAACATTTTGCTACAGTCCATATGAAAGTTAAACGGCATAGATGCCCTCAATGCCCTGAAACCTTCAGAAACTACTTCCAACGAAACAAACACATATCTGCCATTCACGGTGTGAAATTAAAAGAATTCAAGTGCACTATGTGTCCAAAAGTATTCACTTTGAGTGGATCCGTCTCGCCCATACCTGAATCGAAGCGAAGAATCGTGCCGTTATTTCAAGTGTCTTACGACAGAAGCCTCTGTAAACCACTAGGCACCTTAGTGAACTTCAGTGCAATCAAAAACGCTTACAAATCCGTTACACAAACTCCATCTCGAAGCCCTTCGCCTATATATATGCCAAGATCTCCATCTCCGTTTATAGAGAAAACGGAATCCGTTAAATCAGTTTATCCTAGACCCAAGAAGAATCCGGATGTAAGACAAAATGCTTTGGCTGTTTTCGAATTCTCAACTGTATATCCTTTTGTGTATggtaacaataaatttaaatgttttgtCTGCTCGCAACCCTTTTTGGACCTTCATCTGTTGAAGGAACACATGAACGAAAACCATACGTTCGCTCCTCTCAAGAGATTAGTCAATAACAGAAgagaaaatgttttaaaagtcGATGTTAGTGATATCACTTGCAAAATATGTCATGCTAAACTCAGTGATTTGGTCCAATTAAAACAACATTTAAAAGAAACTCATAACAAATCAATAAACTTGGATCTTCAAGACAATTTGATACCTTTCAAATTGGAAATTGTCGACGGATCATATAAATGTGTTATATGTGAAGAGAATTTCATCAAAGTACGGATATTAGTTATCCATATGAGCGTACATTTCAGCAATTATAGCTGCGAGATATGCGGATCGGGTTTCATGACGCTGCGACTTCTGAAAAAACATTTGGAGGTCCATGAAACTGGTAACTACTCATGTGACCGTTGTAGCAAAGTTTTTAGCACTCCTTACAAAAGGACTTTGCATATTCGAGGCGTGCACCTCAAACAGTATCCAAGAAGATGTCCTATTTGTCCAGAGAGGTTTAATTCGAATTATAAAAGAACTATTCATTTGCAAGATGTCCACAACCAGTCTACAAGAGTGCATAAGTGTGAAACATGTGGAAGGGGCTTCAATTTAAAGTACCATTTGATATGTCATACAAGGAACGGTAAAAAGCTACAGGGGAATATTGTTCAACCTAATATGCCGCACACAATACATCATCGTTTTTCTCTTCTAGGAATCATTGAAGAATCAAACTCAACCATCACAGTGAAAGCGGAGGACGGGGAAGAAATCAAACTGACTATTCTCAAACGTCCAATACCTTTAGAAACTCTAGAATATGAGATCGAATCATGCGCTGtagatgaaaaaaatgaaatacaagGAACTGCCAGAAAGAACTCTGGATTTTTGAAAAAGCATgatagctatgatttaaaagtCGTCAAAGATTTGACCAACGATCCAAATGTAAAAACAGGAAATCTACGTTTATTGAAAGAGCCTATTTGTTTAGATAATATCAATTGGAAAAACGAAAAACATGAAATTCAAAGTTCAATCACTTTTAACGTTAAGACTGTGCAAGGATTTTTATGCGGAACTTCAAGAAAAAGGCGGAAAAGTGAGGAGTATCAATCTTGGAAACAGAATGCCTtagtaatatttgaattttcttATGTGTACCCGTTCATACATGCTGGCAATAAGTATAAATGTTTTGTCTGCCTAAAGCCCTTTTTAGACGCAAGTCTTCTAAACCAACATGCCATAAACGAGCACAGCATTAAAGAAATGAAACGTGAACTGAATAATCGAGTTAGGGATAAAAACATTAAAGTAGACGTAACATATTTGCAATGTAGAATTTGCTCTCAAACGCTGTCTAATTTACAGACATTAAAATCACATCTAAAAGATAGTCATGATAAAAAGATCGAACCAAATCTTCAAGATAACATCATTCCTTTTAAGTTAGGAGGTGAAAACTTTGACTGTCAAATTTGTGGAGAACGGTTTCTTAAACTAAGACTCCTCATAATCCATATGAGCAAGCATTTTAATAACTACAGCTGCGAATTTTGTGGTGCAGTGTTTATTTCACTCAATTTGCTGAAAAGACATTTGCAAACGCATGAATCTGGAAGTTTCCCGTGCGATAAATGTGATAAAGTATTCAGTAATGCTGCTAAACGGACATTACATACCAGGGGTGTCCATCTCAAGCAGTTGCCGCGAAGATGCCCAATTTGTTCAGAAAGATTTAACTCTAACTATCAAAGAACTAAACATTTACGAATAGTTCATAACCAAACAACTGGTTTATATCGGTGTGACACTTGTGGACGAGAATATGACTTGAAATATCACCTATTAATACATATTAGATCGGTTCACTTACAAGAAAGAAATCAAGAATGTCCTGTTTGCCACGCAAGATTCTTTTCCAAGTACTGTCTATCAAGACACATGGTCATACATACAGGGGAGAAGAATTTCAAATGTGAGGTGTGCGGTAGAGCGTACGCAAGACGGAAAAATTTACGAGAACATTCTAGATGTCATGAAGCCGGCACGTGTTCGATATGTGGTCAAAATTTTGCAGATCAAAATCATTTAGTTGCTCACGTCAATAGTGCTCATGGGATTATCTAA
- Protein Sequence
- MKNLYICFYCDQQFTDPVKLRNHNLEHSLLKYSQVKHAMSKLRKYELVKVDVTDVNCRLCEDEIPDYPSLKWHLLEKHNKPLDPKSADGMLPFKVTADEFQCVLCIEKYAEFKSLNQHMNVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCESCDKIFRSTNAKNEHFATVHMKVKRHRCPQCPETFRNYFQRNKHISAIHGVKLKEFKCTMCPKVFTLSGSVSPIPESKRRIVPLFQVSYDRSLCKPLGTLVNFSAIKNAYKSVTQTPSRSPSPIYMPRSPSPFIEKTESVKSVYPRPKKNPDVRQNALAVFEFSTVYPFVYGNNKFKCFVCSQPFLDLHLLKEHMNENHTFAPLKRLVNNRRENVLKVDVSDITCKICHAKLSDLVQLKQHLKETHNKSINLDLQDNLIPFKLEIVDGSYKCVICEENFIKVRILVIHMSVHFSNYSCEICGSGFMTLRLLKKHLEVHETGNYSCDRCSKVFSTPYKRTLHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRNGKKLQGNIVQPNMPHTIHHRFSLLGIIEESNSTITVKAEDGEEIKLTILKRPIPLETLEYEIESCAVDEKNEIQGTARKNSGFLKKHDSYDLKVVKDLTNDPNVKTGNLRLLKEPICLDNINWKNEKHEIQSSITFNVKTVQGFLCGTSRKRRKSEEYQSWKQNALVIFEFSYVYPFIHAGNKYKCFVCLKPFLDASLLNQHAINEHSIKEMKRELNNRVRDKNIKVDVTYLQCRICSQTLSNLQTLKSHLKDSHDKKIEPNLQDNIIPFKLGGENFDCQICGERFLKLRLLIIHMSKHFNNYSCEFCGAVFISLNLLKRHLQTHESGSFPCDKCDKVFSNAAKRTLHTRGVHLKQLPRRCPICSERFNSNYQRTKHLRIVHNQTTGLYRCDTCGREYDLKYHLLIHIRSVHLQERNQECPVCHARFFSKYCLSRHMVIHTGEKNFKCEVCGRAYARRKNLREHSRCHEAGTCSICGQNFADQNHLVAHVNSAHGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636741;
- 90% Identity
- -
- 80% Identity
- -