Ecan050150.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421485.1:16454905-16461669[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0023 0.35 13.1 0.5 1 23 5 27 5 27 0.93 2 24 0.076 12 8.3 0.6 1 23 100 122 100 122 0.98 3 24 0.0016 0.25 13.6 0.2 1 23 126 148 126 148 0.95 4 24 0.074 12 8.3 0.4 1 23 153 176 153 176 0.91 5 24 0.0013 0.2 13.9 2.1 1 23 182 205 182 205 0.93 6 24 0.066 10 8.5 0.2 1 12 212 223 212 227 0.87 7 24 0.085 13 8.1 1.4 1 23 332 354 332 354 0.97 8 24 2.4 3.8e+02 3.6 0.4 2 23 379 401 378 401 0.85 9 24 0.15 24 7.3 0.1 1 23 425 447 425 447 0.96 10 24 0.00051 0.08 15.1 0.2 1 23 451 473 451 473 0.98 11 24 0.00022 0.035 16.3 0.6 1 23 478 501 478 501 0.96 12 24 0.0052 0.81 12.0 0.3 2 23 508 530 508 530 0.93 13 24 0.086 13 8.1 6.4 1 23 537 560 537 560 0.96 14 24 0.00035 0.055 15.6 2.0 2 23 567 588 566 588 0.96 15 24 0.043 6.7 9.1 0.3 1 23 750 773 750 773 0.93 16 24 0.54 85 5.6 1.3 2 23 799 821 798 821 0.91 17 24 0.0076 1.2 11.4 0.3 1 23 843 865 843 865 0.97 18 24 1.4e-05 0.0021 20.1 0.3 1 23 869 891 869 891 0.99 19 24 0.00028 0.044 15.9 0.3 1 23 896 919 896 919 0.95 20 24 0.00021 0.032 16.4 0.9 2 23 926 948 926 948 0.97 21 24 0.00014 0.022 16.9 1.2 1 23 955 978 955 978 0.98 22 24 0.002 0.32 13.2 3.0 2 23 985 1006 984 1006 0.96 23 24 0.00031 0.048 15.8 2.5 1 21 1012 1032 1012 1034 0.94 24 24 0.002 0.31 13.3 0.0 2 23 1038 1060 1038 1060 0.94
Sequence Information
- Coding Sequence
- ATGAAGAATTTATATATTTGCTTTTACTGTGATCAGCAATTTACAGATCCTGTCAAACTTAGGCTTCATAATCTAGAACATTCTTTACTGAAAAGTTCTCAAGTAAAACATGCCATGTCAAAACTGAGGAAATACGAATTAGTGAAGGTAGATGTTACAAATGTCAATTGTAGACTCTGTGAGGACGAAATTCCCGATTATCCGTCGTTAAAATGGCATTTACTTGAAAAACACAATAAACCTTTGGACCCTAAATCTCCAGATGGCATGCTACCATTCAGAATTACTACTGACGAGTTTCAATGTGCGTTATGTATCGAAAAATATTCGGAATTCAAATCATTAAACCAACACATGAATGTACATTTCCAGAACTTCATTTGCGAGCAATGTGGCACTGGATTTGTTACACCAGAACGTTTGAGAACGCATGCATTTTCACATGAAACTGGTTCCTTTCCGTGCGATAGCTGCGATAAAATATTCCGTTCTACTAACGCAAAGAATGAACATTTTGCTACAGTCCATATGAAAGTAAAACGGCATAGATGCCCTAAATGCCCCGAGACTTTTAGGAACTACTTCCAACGAAACAAACACATTTCAGCAATTCATGGCGTAAAGTTAAAAGAGTTTAAGTGCACCATGTGTCCAAAAGTCTTCACATTAAGTGGATCCGTCTCGCCGACACCTGAATTGAAGCGAAGAATCGTGCCGTTATTTCAAGTGTCTTACGACAGAAGCCTATGTAAACCACTTGGTACCTTAGTGAACTTCAGTGCAATCAAAAACGCTCACAAATCTGTTACTCAAACTCCGTCTCGAAGCCCTTCACCCATATACATACCAAAATCTCCATCCCCGTTCATTAAGGAAACAGAATCCGTTAAAACAGCTTATTCTAGACCCAAGCAGAAACCGGATATGAGACAAAATGCTCTCGCTGTATTCGAATACTCCACTGTATATCCTTTTGTGTATGGCAACAATAAATTTAAGTGTTTTGTCTGCTCGCAACCATTTTTGGACCTTCATCTGTTAAAGGAACACATGAGCGATCATACATTCGCTCCGCTCAAAAGATTAGTTAATAATCGAagagaaaatgttttaaaagttGATGTCAGTGATATCACTTGCAAAATATGTCAGGATAAACCGACTGATTTGATCCAATTAAAACGTCATCTGAAAGAAACTCACGACAAATCAATAAACTTGAATCTTCAAGACAATTTGATACCTTTCAAATTGGAAATTGTCGACGGATCCTATAAATGTGTTATGTGTGAAGAGAGTTTCATCAAAGTACGTATATTAGTTATCCACATGAGTGTACATTTCAGCAACTATAGCTGCGAGATTTGTGGTTCAGGTTTCATGACTTTGCGGCTTTTGAAAAAGCATTTGGAAGTTCACGAAACTGGTAACTACTCTTGTGACAGTTGTAACAAAGTTTTTAGCACTCCTTACAAAAGGACGTTACATATTCGTGGAGTACACCTTAAACTGTATCCTCGAAGATGTCCTATTTGCCCAGAAAGGTTCAATTCAAATTATAAGAGGACTATTCATTTACAAGATGTCCACGACCAGTCTACAAGAGTGCATAAGTGTGAGACATGTGGCAGGGGCTTCAATTTGAAGTACCATTTGATTTGTCACACGAGGTCTGTTCATTTACAAGAAAGGAATCAGCAGTGCGCGATTTGTCTACAGAGATTCTGTAATAAGGAGTCGTTAAAGCGGCATATGGTGATCCATACTGGAATAATTCAAGAATCAAACTCAACCATCACAGTAAAAGCGGAGGACGGGGAAGAAATCAAACTGACTATTCTCAAACGTCCAATACCCTTAGAAACTTTAGAATATGAAATCGAAACGAGTGATATAGATGAGAGCGATAAACTCCAAGAAACTGCTAAAAAGAAACACGGATTTTTAAAAAAGAAGCACGACCGCTGTGATATGACATTCATTAAAAATGTAACCAGCAATTCAAATGTAAAAACAGGAAATTTACGTATATTGAAAGAGCCCATTTCTTTGGATGATATCAATTGGAAAAACGAAAAACACGAAATTCTAAGTTCTGTCACTTTTAATGTGAAGACTGTACGAGGATTTTTATGCGGAACTTCAAGGAAAAGGAGCAAAACTGAAGATTACCAATCTTGGAAACAGAATGCCTTAGTTATATTTGAATTTTCTTATGTTTACCCGTTCATACATGCTGGCAATAAGTACAAATGCTTCGTTTGTCTAAAGCGCTTTTTAGACGCAAGCCTTCTAAACCAACATGCTATAAACGAGCACAGTATCAAAGAAATGAAACGTGAACTGAATAATAGAGTTAGAGATAAAAACGTAAAAGTAGACGTTACATACTTGCAATGTAAAATTTGTTCCCAAACATTGACTAATTTACAGACATTAAAATTTCATCTGAAAGATAATCATAACAAAAATATAGAACCAAATCTTCAAGATAATATCATACCATTTAAGTTAGGAGGTGAAAACTTTGATTGCCAAATTTGCGGAGAAAGGTTTCTTAAACTAAGACTCCTCATAATTCATATGAGcaaacattttaataattacaGCTGCGAAATTTGTGGTTCTGTATTCATTTCACTAAATTTGCTAAAAAGACATTTGCAAACACATGAATCTGGAAGTTTCCCTTGCGATAAATGTGATAAAGTATTCAGTAACGCTGCCAAACGGACTTTACATACTAGAGGAGTGCATCTCAAGCAGTTTCCACGAAGGTGCCCCATTTGCTCTGAAAGATTTAACTCTAACTATCAAAGAACCAAACATTTACGTATAGTTCATAACCAAACAACTGGTTTATTTCGATGTGATACTTGTGGGCGAGAATATGATTTAAAATATCATCTATTAATACATATTAGATCGGTTCACTTACAAGAAAGGAACCAAGAATGTCCTGTTTGCCATGCAAGGTTCTTTTCCAAGTACTGTCTCTCGAGGCACATGGTTATACATACAGGGGAGAAGAATTTCAAGTGTGAGGTTTGCGGAAGAGCTTATGCAAGACGAAAGAATTTGCGCGAACATTCTAGATGCCATGAAGCCGGCGTGTGTTCGATATGTGGCCAAAATTTTGGTGATGAGAATAATTTAGTCGCTCACGTCAGTAGCGCCCATGGAATTATGTAA
- Protein Sequence
- MKNLYICFYCDQQFTDPVKLRLHNLEHSLLKSSQVKHAMSKLRKYELVKVDVTNVNCRLCEDEIPDYPSLKWHLLEKHNKPLDPKSPDGMLPFRITTDEFQCALCIEKYSEFKSLNQHMNVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCDSCDKIFRSTNAKNEHFATVHMKVKRHRCPKCPETFRNYFQRNKHISAIHGVKLKEFKCTMCPKVFTLSGSVSPTPELKRRIVPLFQVSYDRSLCKPLGTLVNFSAIKNAHKSVTQTPSRSPSPIYIPKSPSPFIKETESVKTAYSRPKQKPDMRQNALAVFEYSTVYPFVYGNNKFKCFVCSQPFLDLHLLKEHMSDHTFAPLKRLVNNRRENVLKVDVSDITCKICQDKPTDLIQLKRHLKETHDKSINLNLQDNLIPFKLEIVDGSYKCVMCEESFIKVRILVIHMSVHFSNYSCEICGSGFMTLRLLKKHLEVHETGNYSCDSCNKVFSTPYKRTLHIRGVHLKLYPRRCPICPERFNSNYKRTIHLQDVHDQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCAICLQRFCNKESLKRHMVIHTGIIQESNSTITVKAEDGEEIKLTILKRPIPLETLEYEIETSDIDESDKLQETAKKKHGFLKKKHDRCDMTFIKNVTSNSNVKTGNLRILKEPISLDDINWKNEKHEILSSVTFNVKTVRGFLCGTSRKRSKTEDYQSWKQNALVIFEFSYVYPFIHAGNKYKCFVCLKRFLDASLLNQHAINEHSIKEMKRELNNRVRDKNVKVDVTYLQCKICSQTLTNLQTLKFHLKDNHNKNIEPNLQDNIIPFKLGGENFDCQICGERFLKLRLLIIHMSKHFNNYSCEICGSVFISLNLLKRHLQTHESGSFPCDKCDKVFSNAAKRTLHTRGVHLKQFPRRCPICSERFNSNYQRTKHLRIVHNQTTGLFRCDTCGREYDLKYHLLIHIRSVHLQERNQECPVCHARFFSKYCLSRHMVIHTGEKNFKCEVCGRAYARRKNLREHSRCHEAGVCSICGQNFGDENNLVAHVSSAHGIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01166936;
- 90% Identity
- -
- 80% Identity
- -