Pmus016615.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829115.1:8642081-8644393[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-10 3.4e-08 33.7 0.1 1 37 13 49 13 57 0.88
Sequence Information
- Coding Sequence
- ATGGAAACAAGTAATAAAAAGCGACGTGGTGTATGGACTGAACAGCAACTTAAATCTGCAATTGAGGCTATAAAACACGGTCGTATGTCACAAAGAAAGGCAGCAGCTACCTTTAATATCCCACGACGAACTATTCGAAATCACCTTATATCTGGCAGTGAAGAAAAGAGAACTGGCCGATCAACTACTCTAACTGATGCCCAAGAAAAAGATTTAGCAAGACGGATAATTCGACTTGCTCAAGTAGGCGTCCCGTTAACGCGCAAGATTGTGAGAAAGCAAGCCTACTTATTTTGTCAAGCCAATGAAATACCAAATACTTTCAATGACGTTAAATGCATAGCAGGTAGAAAATGGCTCTCTAATTTTTTAAAACGAAACCCTGAAATTTCAGTTCGCAAAGCACAGTTTATGAACTCTGCAAGGGCTCAAAAATTGAACAAGTACATTGTGCAACAGCATTTCAcggctataaaaaatatatatgatgaGTTAGACATTCCTCGGCATCCAGaacgtttatataatatagatgaaAAGGGCTGTCGGTTGACATTGCACCACCAGCAACATGTTCTTGCACAAAAAGGCAGTAAAAGAGTTCATTTTATCGCACAGGAGCATGCTGAAAACGTCACCATTGCTATGTGTGTCAATGCTTCAGGTAATTCAGTACCACCAATgataatatttaaaggtaaaagGCTAAGACCagaatttaatgataatttgcCTGATGGTACTATAGTCAAAATGGCGCCAAAAGGTAGCATGACTACtgaattatttatagatttcatcCATCATCTTGGCAACTACAAGTCGCCTGGAAAATGTTTGCTAGTTTTTGATGGAGCTGCTTCGCATTTGGATGCTAGGATTGTGGATGCCGCAGACGAAAACCAAATCGTATTATATTGCCTACCCTCAAATACCACCCATGAGTTACAACCATTAGATAAATCAGTGAACAAATCGTACGAACATCATTGGGATGAAGAAGTCTTGTTGTACGCCTATCGTCACCCAGATCGTAAACTCACGAAGGCAAGGTTTAACAAAATTTTCTCTAAGGTATGGCCTAAGTGTGTAACtcaagataatataaaaaatgggtTTAGAGCTACTGGACTCCATCCCTATAATCCAAATGCGATTCCCGAGGAGGCTTTTGCACCTTCCATTCTTACTAATAGACCTGCTCTTGATGAAACCGCTTCTAACTCAGTCGCTTCAGCAGCTTTAGAACAGTCCGTGGTTAATGATTCAGATACAGATTGTGAAGAAAGCTTTTGTTTGTCAccgtcaataataaataaagaaaatgttgATTTTGACTGTTGCTCTGAACCTAGAACTTTGCTGCATCTGCCTCAGCCTTTGTCTAGATATTCATCCTCACCTTCACCTACTCCTGGGGCACAGAAACATTCACCAACTTACGCCTATAGGAAATTGGTTGAATACAGTTCCTCCACCGAATCTACTACTATTGATATTATAGAACAATCTACAGTAACAGACTTGAATGTATGTAATAGAGAGTCACAATTTCAATCTCCAATTCCCAGCACTTCTGGGTTAGGACAGAATTTCGTACAAAGACCAGTCATAAATTCTTCCACATCAGACGAAGATGATGAAAATATTGACATAAAcgtattacaaaaatactttcaatATCCTGCCAGGAGGAGTAAAATTTATACGTCATCAGAATCAGAAGAATCAAAACTGGATCCATCTGATGGAATACCAGCGTGCACAGAAGCAAATACACGTCAAACCCAAATAGAAGATCACCAGTCTGAAGATTCAGACAATGTGCCACTATTAGATTTGAAAAAAACTATTAAGAAAACACAAAAGAGGTCTCCATTTCACGAACTTATACCTACACCTAACTTTGCAGTAGTAAAGAATAAACCAAGAcgaaaagcaattaattatattgGTCAAAAGGTGACTAAGGACTTATTTGATagtgttaaagaaaaaaaagaaaagaaaacggTTACAGCAATATCGAAGCCAAAAAGAATTGTAAACCGAAgaaagaacaaaaataatacaggcAAGACGAAAGTGGATAAGAAGAAGTTGAGAGAAAAGAAGATAAAACATAAGAaagttaatgttaaaaaaagttCACAATCAAAGATTATGGCTGAAAATTGGTATTGCTCAGCTTGTAAAACTGAAGCAGTGAGGGCTATGCGAAAATGCATTAGTTGTTTATTGTGGTACCACGAAGAATGTGTGGGATTAACTAAAAAAGACTTAGAGGATTTCATATGTCCAGAATGCAACTAA
- Protein Sequence
- METSNKKRRGVWTEQQLKSAIEAIKHGRMSQRKAAATFNIPRRTIRNHLISGSEEKRTGRSTTLTDAQEKDLARRIIRLAQVGVPLTRKIVRKQAYLFCQANEIPNTFNDVKCIAGRKWLSNFLKRNPEISVRKAQFMNSARAQKLNKYIVQQHFTAIKNIYDELDIPRHPERLYNIDEKGCRLTLHHQQHVLAQKGSKRVHFIAQEHAENVTIAMCVNASGNSVPPMIIFKGKRLRPEFNDNLPDGTIVKMAPKGSMTTELFIDFIHHLGNYKSPGKCLLVFDGAASHLDARIVDAADENQIVLYCLPSNTTHELQPLDKSVNKSYEHHWDEEVLLYAYRHPDRKLTKARFNKIFSKVWPKCVTQDNIKNGFRATGLHPYNPNAIPEEAFAPSILTNRPALDETASNSVASAALEQSVVNDSDTDCEESFCLSPSIINKENVDFDCCSEPRTLLHLPQPLSRYSSSPSPTPGAQKHSPTYAYRKLVEYSSSTESTTIDIIEQSTVTDLNVCNRESQFQSPIPSTSGLGQNFVQRPVINSSTSDEDDENIDINVLQKYFQYPARRSKIYTSSESEESKLDPSDGIPACTEANTRQTQIEDHQSEDSDNVPLLDLKKTIKKTQKRSPFHELIPTPNFAVVKNKPRRKAINYIGQKVTKDLFDSVKEKKEKKTVTAISKPKRIVNRRKNKNNTGKTKVDKKKLREKKIKHKKVNVKKSSQSKIMAENWYCSACKTEAVRAMRKCISCLLWYHEECVGLTKKDLEDFICPECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637484;
- 90% Identity
- iTF_00636235;
- 80% Identity
- -