Pmus000178.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- lolal
- Assembly
- GCA_963691645.1
- Location
- OY829098.1:3681556-3690341[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-15 4.6e-13 49.3 0.0 1 42 320 362 320 365 0.94
Sequence Information
- Coding Sequence
- ATGTCTCAACAATACAGCTTAAGATGGAACAACCACCAGCCCAACTTCATCTCCATGTTCACGACGCTACTGAACACACAGACACTGGTGGATGTTACCCTCGCAGCAGATGGAAAGCAACTGCTCGCCCACAAAGTTGTGTTGTCTGCATGCAGCACTTATTTTCAGGCATTGTTCGTCGACAACCCGTCGCCTCACCCCATAGTTATATTGAAGGATGTGACATACGCAGACCTACGTACTATGGTGGACTTCATGTATTGCGGTGAAGTCAATGTCACTGAAGAACAGTTACCCAAGGTGCTGGACACCGCTAAGCTGCTTAAGATCAAAGGTCTTACAGAGATGCCAGACTCAACCTCGCTCACCAGGTCGCAAGGCACCTCCTCAGAGTTCCACAGTCAGGGTGATTCAATGGATTCCCAGAGGCATTCGCCAGCTGCGTCACCTTCTAATAAACGCAGAAGGCGTAGGAAAAGTTCAACAGGTTCAACATCATTAAACATGGTGAATGAAGAGCACAGATCTGACATGGGTGCGCAGACGGTGGAAGCCATCACGTTGAGTAGTCTCCCTCAGCAGCGTCGCATTAGGGAGTACCACGAGATACGGACCATTGATAACTCACAACAGACACCAGATCAAGACAACTTGCCATGCGATCCGATGACGATGGACTCAACGCCAACAGGATTACCACAAGGAGGCCAGTGGACAATGATGGAGCATTCGTACCCGCGTTACTCGAACGCTTGCATCGGAGGGGCGCTACAACCGGACCCGGGCATGTATATCAATAACGTCATCAACCCGCACATGGAGGCCGATATCGCGAACTACGGACAGTCTCTAGGCGTGCCGGGGCCCTCGCCGGGGCCCTCCTGCGTCGATATCCAAGCGCCTCAAGAACAAAACCCGATGCCTACACCGAAACGAAGACGCACAACCAATCCACAGTCAGAGGAAAACTTCCAGCGAGCGCTCGAAGCCGTTCGCTTTGGAGGTATCGGCTTCTGCAAAGCGGCGCGAATGTTCGGTGTGAACAACAGGACGCTCTGGCTCGAATACAAGAAGAAAGGATACCCCAACAACCGTCCGAGTATTAAAAGCAGAATTAAGAGAGAACACACGACGCCTCCGCCCGAAGTCAAGGAAGACCCGCAGCTGCCAGACCAGCAAATGGCGTTATTATGTCCCCAGCACCAAGTGCCACCCGGCTTTATCGACTCGACAACTACGCACGGCTTTCCCCTCCAGGGCGTTCCACATAATTCACCCCTCAACATTTTGGGGGTGAATTTTAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAADGKQLLAHKVVLSACSTYFQALFVDNPSPHPIVILKDVTYADLRTMVDFMYCGEVNVTEEQLPKVLDTAKLLKIKGLTEMPDSTSLTRSQGTSSEFHSQGDSMDSQRHSPAASPSNKRRRRRKSSTGSTSLNMVNEEHRSDMGAQTVEAITLSSLPQQRRIREYHEIRTIDNSQQTPDQDNLPCDPMTMDSTPTGLPQGGQWTMMEHSYPRYSNACIGGALQPDPGMYINNVINPHMEADIANYGQSLGVPGPSPGPSCVDIQAPQEQNPMPTPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEVKEDPQLPDQQMALLCPQHQVPPGFIDSTTTHGFPLQGVPHNSPLNILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361512;
- 90% Identity
- iTF_00908987;
- 80% Identity
- iTF_01166848;