Pmus007670.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- Rfx2
- Assembly
- GCA_963691645.1
- Location
- OY829104.1:17545415-17582961[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.017 2.5e+02 3.0 0.0 3 20 209 226 207 228 0.88 2 3 0.25 3.6e+03 -0.7 0.0 43 67 326 350 314 352 0.83 3 3 5.5e-32 7.7e-28 97.6 0.1 14 78 510 574 497 575 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAGATGGGGTTTGAGAATGTGTTTTATTTGGAGAATTTTGAGTGTGCCGGCGACGAGGTACTTGTCGAGTCATCGCCTCCAGGGTCACCTGTCATGGCAACGAGGCTTGCGACCCCTGCACAGGGTGCAACCGCGGCTGGCGGCGCATCGCCCTCTGCTGTGCGTGAGCTGATTGTCATTCCGGAATTACCTAATTCTATACATTTACAGCACGCCATGCAACAGGTTTCGAGCACGGTGGTGGAGGTGAACGGAGACAGCTCGGGCCACTCCAGTCCCTCCGCAGAAGGTCAGCACACCTACATCACAGTCGCGAGTGATTCACTCGGCGAGGGCGGCAACGGTGTTAACTATCATGTGCAGTACGTTACCGAGCCTCAAGAGATTTACACTCAGAGTCACACCACACAcatGGAGACCCTCCGCTCGTACCCCGTGTACGGAGTGACGACGGTGGGCGCCGACAGCTCCGCCGAGGGGCCCTCCACCGACAGCGGCTGGGGCCCCACCGCCTCCACCGAGTACACCGCCTATGGCGTCGTCGTGGGCGGCGACGAGGCGGACGAGCCCGCGTCGCCCGCGGCGCCGGCCGGGCCCGCCGCCGTGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGCGCACTACGAGACCGCCGAAGgttctataatctcggcctTCACTTCTGACCCTTCACTTATAGCCTGTCACGCTGAAACTCTACCAGCTGGAAATAATTCTACCACAGAACCTGAAGCAATGACATCTCGTCCAGTGTTAGTAACTGAAGCTAATACAAACCCTAGAAAAAGAAAGAGTAATCCCGAAAAGTGGGCTAAaacaaaagaaatgaaaaaaatacagATAATCAATCAAATGTTAGGCAGAGTTACACTATCTATCGATGCAGCCATTCTAAAGGCATTCGAAGGCCAAACACAATCTGAAAAACACATTGCTGAAAATTTTGCGAATGGATTCGAAAAGTCAGTAAAAGATATAATTCCTAATTGCAACATAAAAGTCCTGGGCCTTAATGCACACAAAATAACATCCATAGATTCTAGTATCCGATATAAGAAAGCTACAGGAGaTGAGGTCAACGAATATCTTAATAATCAACAATACGTACTAGCACTGTTTATTGACTTCTCTCGCGCATTTGATACCCTGGAACATGAACAACTGATTACTAAACTAAATAATTGTGGGGTTCGCGGCCCATTGCTAAAGTGGTGTGAAAACTACCTTAATAACCGATCATTCacagttaaaattaataagtcgTACAGTGATCCGATTATAGTCACTGAGGGCACGGCCCAAGGTTCTGTGATCGGACCATTGCATTTTCTTGCGTACGTCAATGATATGCGTCACTGCATAAACCACTGCACATGCTACCAGTTCGCTGACGACACCTGCCTTGTAGCTACTCATAAAGATCCAAAACAAGCTCTGGAACTACTGCAATCTGATTTTAACTTACTCACCCAATGGTGTCATGATGCAGGCCTTGTACTTAACGCTAGCGTATCCCTTCCCCGCTCAACTCTGTACGCGCACTACCTCCGCCACTGCGCCACCCATCGCCTCGAACCCGTCAATGCAGCATCCTTCGGGAAACTCATTCGCTCAGTGTTCGTGGGGTTAAGGACCCGACGTCTCGGCACCCGCGGGAATTCTAAGTACCATTACTATGGGATCAGGGCCAAGCCGGGAATTGATCAAGATCACAGCGACGTGAGGGACGAAGGTCAAGACCATCCCGAGAATGGAGACGAGAAGACAGATGTATTGGATCATCAGgagggcagaGCCCGCGAGCGCTCCCGGGCCTCCAGTCCGTCGTTGAACCAACACCGCCAGTACCTGGGCGTGGTGTCGCCACCGGAGCCGCCGCCGCTCACCATCGTCGACCTTCCAGAGGACGTGCCCCATGAGTCACTGGAAGCTCTGAGGAGACATCATAGGCAACACGCCAGCGATTTCCTAGAGGCCGTGGCGGCCCTGGACATCTCGGCGGTGGAGCGCGCCCGCCGCCTGTTctggcgccgcccgccgccgtcGCTGTGCCGGCGCGTGCTGTGCAAGCTGACGTCACGCCGCGACGTGGCCGCGTGGCTGCGCCTGGCCGAGCTGCAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCGCCGCAGCTGACACAGTCCATCCGCAACTTCGCGAAGTCGCTGGAGGGCGCGCTGGCGcagggcgcgggcggcgcgccgggcgcggcggcgcgcgcgcaggcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGGCACGACGCTTGTATACCGTAACTAGTCTCTTGGGGAGGGGTAtatcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGGCACGACGCTTGTATACCGTAACTAGTCTCTTGGGGAGGGGTAtatcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGGCACGACGCTTGTATACCGTAACTAGTCTCTTGGGGAGGGGTAtatcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGGCACGACGCTTGTATACCGTAACTAGTCTCTTGGGGAGGGGTAtatcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGGCACGACGCTTGTATACCGTAACTAGTCTCTTGGGGAGGGGTAtatcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGGCACGACGCTTGTATACCGTAACTAGTCTCTTGGGGAGGGGTAtatcggcggcggcggcggcgctggcggcggCGCTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAggccgcgcgcgccgtgctCACCAACCACCACCAGATACACCAGATGCTGGCGGACCTCAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCGGCCTGGGCCTGCTCCTGCGGCAGCGCCGCCACTGCGCACAAACTGGAGGCTGACTTTAAGGCGACGCTGGGGCGCGGCGCGTCGCTGGAGCAGTGGGCGGGCTGGCTGGAGGGCTGCGTGCGCTCGGCGCTGGCGCCGCACGAGCGCCGCGTGGACTACAcggcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGCCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGGCGCGTGGCCTCGCACCACAACGTGCCGTGCATCTCCGTCATGCAGCGAGTGCTCGAACAGCCCGAAGAGGAAGAAATTCTGGCTGAGGAGCCATTACGCGCAGACCCTGATGAGGATGACCAAGATTGGGAGTGGGACGACGAAGAGGAAGAAGATGACGAACAACCAGAATGCAAGAAGGTCAGGTCTTCTGAGTAA
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPGSPVMATRLATPAQGATAAGGASPSAVRELIVIPELPNSIHLQHAMQQVSSTVVEVNGDSSGHSSPSAEGQHTYITVASDSLGEGGNGVNYHVQYVTEPQEIYTQSHTTHMETLRSYPVYGVTTVGADSSAEGPSTDSGWGPTASTEYTAYGVVVGGDEADEPASPAAPAGPAAVRMPPATVQWLLAHYETAEGSIISAFTSDPSLIACHAETLPAGNNSTTEPEAMTSRPVLVTEANTNPRKRKSNPEKWAKTKEMKKIQIINQMLGRVTLSIDAAILKAFEGQTQSEKHIAENFANGFEKSVKDIIPNCNIKVLGLNAHKITSIDSSIRYKKATGDEVNEYLNNQQYVLALFIDFSRAFDTLEHEQLITKLNNCGVRGPLLKWCENYLNNRSFTVKINKSYSDPIIVTEGTAQGSVIGPLHFLAYVNDMRHCINHCTCYQFADDTCLVATHKDPKQALELLQSDFNLLTQWCHDAGLVLNASVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPGIDQDHSDVRDEGQDHPENGDEKTDVLDHQEGRARERSRASSPSLNQHRQYLGVVSPPEPPPLTIVDLPEDVPHESLEALRRHHRQHASDFLEAVAALDISAVERARRLFWRRPPPSLCRRVLCKLTSRRDVAAWLRLAELQLYQRAVELLLPDVLRPIPPQLTQSIRNFAKSLEGALAQGAGGAPGAAARAQAAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQARRLYTVTSLLGRGISAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQARRLYTVTSLLGRGISAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQARRLYTVTSLLGRGISAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQARRLYTVTSLLGRGISAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQARRLYTVTSLLGRGISAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQARRLYTVTSLLGRGISAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLADLNRVDFRVVREQAAWACSCGSAATAHKLEADFKATLGRGASLEQWAGWLEGCVRSALAPHERRVDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVASHHNVPCISVMQRVLEQPEEEEILAEEPLRADPDEDDQDWEWDDEEEEDDEQPECKKVRSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -