Pinf025913.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:167087750-167090203[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00094 5.5 8.5 0.2 19 46 101 128 94 135 0.88 2 9 0.0034 20 6.7 0.1 26 46 137 157 129 163 0.87 3 9 0.013 80 4.8 0.2 26 46 195 215 182 222 0.87 4 9 0.0069 40 5.8 0.1 26 47 224 245 216 252 0.83 5 9 0.035 2.1e+02 3.5 0.3 18 48 274 304 262 310 0.85 6 9 0.086 5.1e+02 2.2 0.1 26 46 311 331 306 336 0.88 7 9 0.28 1.7e+03 0.6 0.1 22 45 364 387 357 393 0.81 8 9 0.00019 1.1 10.8 0.1 26 52 397 423 389 425 0.83 9 9 0.94 5.6e+03 -1.1 0.0 22 44 421 443 418 447 0.83
Sequence Information
- Coding Sequence
- ATGGATCGCCAATATGTGGGTTTTAAAAGACATGATTATTTGGACGACCATGATATAAAACATCATCCAGGGAGTAAAATACACCAACAAGACTGTACAACACATCAATGGACAACCGACATTAATATTCCCGAAAAAAATCAATGTTATTATTGTGGTAAACAACTGAAATCATCTGCTGCATACAAAAATCATATACAAAGCGTTCATCCAAATGAAAAGCCACCTCATCAATGTAAAACATGCAATAAGGAGTATTTAACACTTAAGAGTCTAACTCGACATGAAAGCCTAATACACTCCGGTAATGATACACCTCataaatgtgaaatttgtttgaaaagttttaaacaaTTGTCACATTTAAGACGACATAAAGTGTTGCACTCTGATCTTCCACCACAGCATTCATGTTCGATATGTCTATCTAAATttcgacaaaaatccaatttagaCGCTCACATGCGCATTCacacaaaagagaaaaaaattaaatgtaaaacaTGCAATAAGAAATTTACTTCACGTGACGAACTAACTCAACATGAAAGTCAACAACACTACGATAATAATGGAGCACATCAATGTGAtatttgtttgaaaaattttaaacaactgTCACATTTAAGACGACATAAAGTGTTGCACTCTGACCTTTCACCGCAGCATTCATGTTCGATATGTCCATCTAAATTTCGACAAAAGAGCAATTTAGACACTCACATGCGCACTCATACAAAAGAGAAACCATTTATGTGTAAAACATGCAATAAGACATTTACTGCACGTTACAGTTTAACTCAACATGAAAGCCAACATCATTCCGATAATATAAGACCTCATAAATGTGATATTTGTTTGAAAAGTTTTAAGCTATTGCCAGCTTTAACACGACATAGAGAGTTGCACTCTCTACTTCCACCACAGCATTCATGTTCATTATGTTCAGCTAAATTTCGACGTAAAGACAATTTAGACGTTCACATGCGCATTCATACAAAAGAGAAAAAGTTTAAATGTAACACTTGCAATAAGAAATTTTATACACGTTGCAAACTAACTCTGCATGTAAGTCAACAGCACTCCGATAATAAACCTTATAAATGTGACAAttgtttgaaaagttttaaacaaTTGTCACATTTAACACGTCATAAACTGTTGCACTCTGATCGACCACCAAAGCATTCATGTTCGATATGTTCAGCTCAATTTCGACAAAAAGGCAATTTGGATGCTCACCTGCGCATTCATACGAAAGAGAAACCATTTAAATGTGTCATGTGTTCAAAAAATTTTGCCCATTCAAATTCACTTAAAGTGCATACTAAAAAATTTCACAGCGAAATTAACCCACTAGAGAAAGATGACTTTAAATTACATACTAAAGATGATCGATTAGAATATGATTTTGTAGCAACTTCTGAGTATGAATCTCACATGTGTATTGATTTCCCTGAAGAAATTCAGCAACAATTACCTTCCACATCTAAAACAAAATTTAGGAATGCTGAATGCTTTATAAGTCCACAAAATATTGTTAATGAGAATTCCAAAGCTTTATCGTTTTTATTGCCTATGGAATATATTCTTAAAGATGCTTCGAAGTCTTCTACATCGACTACCGAATCAAATTTGATTGATATTATCAAAGTAGAGGAATATCAGATAATGGAGCAAAATGTTGAAGAAGTCAAAACTGACAACCCTAAATTTAATAGTATTTATAATATAGCagatttaatttaa
- Protein Sequence
- MDRQYVGFKRHDYLDDHDIKHHPGSKIHQQDCTTHQWTTDINIPEKNQCYYCGKQLKSSAAYKNHIQSVHPNEKPPHQCKTCNKEYLTLKSLTRHESLIHSGNDTPHKCEICLKSFKQLSHLRRHKVLHSDLPPQHSCSICLSKFRQKSNLDAHMRIHTKEKKIKCKTCNKKFTSRDELTQHESQQHYDNNGAHQCDICLKNFKQLSHLRRHKVLHSDLSPQHSCSICPSKFRQKSNLDTHMRTHTKEKPFMCKTCNKTFTARYSLTQHESQHHSDNIRPHKCDICLKSFKLLPALTRHRELHSLLPPQHSCSLCSAKFRRKDNLDVHMRIHTKEKKFKCNTCNKKFYTRCKLTLHVSQQHSDNKPYKCDNCLKSFKQLSHLTRHKLLHSDRPPKHSCSICSAQFRQKGNLDAHLRIHTKEKPFKCVMCSKNFAHSNSLKVHTKKFHSEINPLEKDDFKLHTKDDRLEYDFVATSEYESHMCIDFPEEIQQQLPSTSKTKFRNAECFISPQNIVNENSKALSFLLPMEYILKDASKSSTSTTESNLIDIIKVEEYQIMEQNVEEVKTDNPKFNSIYNIADLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165765;
- 90% Identity
- iTF_01165765;
- 80% Identity
- iTF_01165765;