Pinf003736.2
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992536.1:45322079-45332151[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.5 2.9e+03 -0.2 0.2 22 40 52 70 48 74 0.65 2 8 0.00019 1.1 10.7 0.0 25 50 223 247 210 250 0.85 3 8 2.6 1.5e+04 -2.5 0.0 21 30 516 525 510 532 0.78 4 8 2.6e-05 0.16 13.5 0.4 21 44 544 567 536 571 0.89 5 8 0.0013 7.6 8.1 0.1 26 50 623 647 614 650 0.87 6 8 0.04 2.4e+02 3.3 0.1 25 51 893 919 883 922 0.87 7 8 0.027 1.6e+02 3.9 0.1 21 43 989 1011 982 1016 0.80 8 8 0.5 3e+03 -0.2 0.0 21 43 1017 1039 1010 1047 0.83
Sequence Information
- Coding Sequence
- ATGGAGGAAAATAAAGCCCACAAATGTCGGGCATGTTTCAAAAATGATACAAAAACGtttcttttgtctaaatatgccAGAGGATGTTGTCCCAGAAAAACCTATGGCCAGCTCCTTAATAAATTCGCCAGTATAGAGtTTATTGCCGAACAAGAACGTAATTTAACACAGCATTTATGCTTTCTGTGTTGTCGCCAACTTAGAAATATATATGCCTTTGCAAAACAGGCTCAGTATTGCAATAAAAAACTTATTCATATAATGAACAGGAAAAAGATGGATTGCCTGAAGGAACAAACAATTGATCTACCAGCTTTTGAGTTGGATAAATCTGTTAATATCAAACTAGAAAAAGAACGAGAAAACGATGACTTAAGTACAGATGAAGGAGATACACAGGAATTAACAGATGgaattgatataaaaaatgaagaACATAATGAAACTgctaatttatttttgaaaaacgaatattttgaaaatgttgaaGACAATGAAACAAATAATGCTGCCATTGAAGAATGTCGTGAAATGGAAGATGACAATGAAATAAATAATCAAAATCAATCAAACTATATATCAATAGAATGTGCCACGACTTCAGAAAATACTTGGACACCAAgtataaatgaaacaaaaaaatatgctgTAGCAAATAATGATAATGTTTCCTGTCCAATTTGTTATAAACTCGTAAAACATGATAATTTAATAAAACACATGCGTATACAACATGATATTAAAGTGCCAAGTAAACTACTTCTGAAACAAAACCTATCTCGCAAGGAAAATTTCATAAGACAAacaagttcttttaaaaggaataCAATTCTGATGAATAATAAGATTTATAAATGTCAATCATGTGATTATACAGCTAATAGTCAATCTGCTTTACATTATCACAATGAATATAAGCATGGTTcgaaaGAACACAAAACACTGATTGAAATTCTAAAAGAGGATATGATGGAAAGCAACACAGaaagggaacctTTAAATACTACCAAAAATAGTTCTATGACAACACAATATGAAAATGTTGAAAACGACTTGAGTGATGCTAATAAAGCAATGACATCAATGGATATGGAACACAGCGATGATGAATTTATAAGAAGCCTTTTAGACATTAAAAAGAGGCAACCCAAATCTgttccaccaccaccaccaccaactaaagaaatatataaacccataaatataaaaaatagtcAAACAAATTCGGTGCCATTAAAGGCACTAGCAAGACGTTGTGATGAATGCGGCAAGGTTTATAAAAATAAACATGCTTTACAAGCCCATCAAAGTATTGTTCATATCAGCGAAGATAAGTATAGTTTATGTATACATTGTGGCAAAACATTTAAAAGAAAATCGTATCTTAAAAATCATATTAAAAATGTTCATACTCCTAAAGCTCAAAATAAACCAATTGTTAAGCAGCCACCTAAGGTGCGAGAAAAACGATATATGTGTACAGAATGCTCTTATGTATGCTCCACCATAActgttttaaaaattcacatgAGTCGTAATCATACAGGTGAAAAACCCTATTTATGTGACATTTGTCCCATGTCATTTGTagtaaaatttgatttaaaaattcaTCGTTATATACATACTGGCGAAAGACCATACAAATGTCCAATTTGCTATAAAAGATTTCGTGATAGTTCTAAAATGATAAGACACAAACGCATTCATACTGGTGATCGTTACAAGTGTGATGACTGTGATAAGAGTTTTTCACAAAAtaaTACAAAGCAATCAAAGGATGATGTATCAATAGAATGCCCTACAAAATCCGAACACAATATTACAAATTTAAATGTATCAACACAAATACAAGATGTTAAAGTTCCCTGTCCCATTTGTAATAAACTTATTAGTAGACGTGATAATTTAATAAAACACATGCGTATACTACATGATATTAAAGCGCCAAATAAACTTTTACTGAAACAAAAGCCAGAGCCTAAAGAACAAATTTTCGCCTGTGTAAAATGTCCTTGTAAAtatacaaataaatataaatatttaaatcatCTTTTGGATAAGCATGGTATAAATCAAAAGACTTCCAATAAAAGagaaaaatttcaaatagaaAATAAAGTTATTAAATGTCGGTCATGTGATTATACAGCAAAAACCTACGCTGCACTACACTACCACAACCGTTCCAAGCATGGCACAGAAGAGGATAAatttaaatgtaaattttgtacatATATGTGTTTGAAGAAATTTGATTTATTGTTACatgtaaaaaatgtacataaatcaTTGATTAAAACTCTAAAAgctgatatggaaaataaaactgAACAAAGtgAAACTTTAAATGCTAACACAAATTTACAAGATCCTTTTATGACAGCACAGCCCGACACTTTAAGTGAGGATGATTCCAGTGATGATAATATACCTTTAGTTCATAAGACAAGAAAATTGCAAGATACTACTACAAATGATTTAATGGATATGGATAAAGAAGAATCAAGTGACGAAGAATTTATTAGAAGCATTTTAGATATTAAAAAGAGACAACCAAAAGCTGTATCAACAAAAGCTTTAGCCAGACGTTGTGATGAATGCGgcaatatttataaaaatcatcAAGCTCTGTATGCCCATCAGCGTCATGTACATATTAGCGAAGACAAATATAGTTTATGTCCACATTGtggtaaaaaatataaaagaaaagctGATCTTCGAAATCATATTGAAAAAGCTCATACAGTTAAAGATGATACTCCTGTTGTTAAACAGCCACCCAAGGTTCGGGAAAAACGTTTTATGTGTACAGAATGTTCTTACGTTTGTTCCACTAtaacaatattaaaaattcacataaaTCGTCATCATACTGGTGAAAAACCCCATAAATGTGATCTTTGTTCTATGTCATTTATAGTGCCATATGATTTAAAGGTTCATCGTTATTTACACACCGGTGAAAGACCCTATAAGTGTCCAATTTGCTCAAAAGGTTTTCGTGATAACTCCCATATGATAAAACACAAACGCATTCATAGCGGTGAACGTCCTTTCAAATGTAAAGAATGCGGTAAAGGTTTTACTCAATCGTATAATTTATCTGTACATAAAAGAACTCATCTTAAGGAGAAGAAACTAAATTGTACGATATGTGGTAAATTTTTTGAGAGCAAATCATTTTTGAATATTCATCGTATCAATGAAAATCATCACGATGAAGCTGTATAA
- Protein Sequence
- MEENKAHKCRACFKNDTKTFLLSKYARGCCPRKTYGQLLNKFASIEFIAEQERNLTQHLCFLCCRQLRNIYAFAKQAQYCNKKLIHIMNRKKMDCLKEQTIDLPAFELDKSVNIKLEKERENDDLSTDEGDTQELTDGIDIKNEEHNETANLFLKNEYFENVEDNETNNAAIEECREMEDDNEINNQNQSNYISIECATTSENTWTPSINETKKYAVANNDNVSCPICYKLVKHDNLIKHMRIQHDIKVPSKLLLKQNLSRKENFIRQTSSFKRNTILMNNKIYKCQSCDYTANSQSALHYHNEYKHGSKEHKTLIEILKEDMMESNTEREPLNTTKNSSMTTQYENVENDLSDANKAMTSMDMEHSDDEFIRSLLDIKKRQPKSVPPPPPPTKEIYKPINIKNSQTNSVPLKALARRCDECGKVYKNKHALQAHQSIVHISEDKYSLCIHCGKTFKRKSYLKNHIKNVHTPKAQNKPIVKQPPKVREKRYMCTECSYVCSTITVLKIHMSRNHTGEKPYLCDICPMSFVVKFDLKIHRYIHTGERPYKCPICYKRFRDSSKMIRHKRIHTGDRYKCDDCDKSFSQNNTKQSKDDVSIECPTKSEHNITNLNVSTQIQDVKVPCPICNKLISRRDNLIKHMRILHDIKAPNKLLLKQKPEPKEQIFACVKCPCKYTNKYKYLNHLLDKHGINQKTSNKREKFQIENKVIKCRSCDYTAKTYAALHYHNRSKHGTEEDKFKCKFCTYMCLKKFDLLLHVKNVHKSLIKTLKADMENKTEQSETLNANTNLQDPFMTAQPDTLSEDDSSDDNIPLVHKTRKLQDTTTNDLMDMDKEESSDEEFIRSILDIKKRQPKAVSTKALARRCDECGNIYKNHQALYAHQRHVHISEDKYSLCPHCGKKYKRKADLRNHIEKAHTVKDDTPVVKQPPKVREKRFMCTECSYVCSTITILKIHINRHHTGEKPHKCDLCSMSFIVPYDLKVHRYLHTGERPYKCPICSKGFRDNSHMIKHKRIHSGERPFKCKECGKGFTQSYNLSVHKRTHLKEKKLNCTICGKFFESKSFLNIHRINENHHDEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165752;
- 90% Identity
- iTF_01165752;
- 80% Identity
- iTF_01165752;