Pinf041907.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:214135855-214141975[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00048 0.041 15.7 1.8 1 23 204 226 204 226 0.94 2 18 4.6e-06 0.00039 22.0 1.4 2 23 326 348 325 348 0.92 3 18 0.00015 0.013 17.2 3.7 1 23 354 376 354 376 0.97 4 18 4.2e-06 0.00036 22.1 1.0 1 23 389 411 389 411 0.98 5 18 0.34 29 6.7 0.3 1 23 417 440 417 440 0.92 6 18 0.0011 0.097 14.5 3.6 1 23 446 469 446 469 0.97 7 18 1.7e-06 0.00014 23.4 1.4 1 23 496 519 496 519 0.93 8 18 0.00016 0.013 17.2 4.1 1 23 525 547 525 547 0.97 9 18 3e-05 0.0025 19.5 0.6 1 23 560 582 560 582 0.98 10 18 0.54 46 6.1 0.2 1 23 591 614 591 614 0.90 11 18 0.0011 0.094 14.5 4.9 1 23 620 642 620 642 0.98 12 18 0.00016 0.014 17.2 0.2 2 23 649 670 648 670 0.97 13 18 9.5e-06 0.00081 21.0 0.4 3 23 678 698 676 698 0.94 14 18 0.0038 0.32 12.9 2.8 1 23 704 726 704 726 0.99 15 18 5.5e-05 0.0047 18.6 1.0 1 23 732 754 732 754 0.98 16 18 1.7e-05 0.0014 20.3 1.8 1 23 760 782 760 782 0.99 17 18 8.5e-06 0.00073 21.2 0.5 1 23 788 810 788 810 0.99 18 18 0.00073 0.062 15.1 0.1 1 23 816 838 816 838 0.96
Sequence Information
- Coding Sequence
- ATGTCTgaagatttattaaaaaagtgcCGCACTTGTTTAAGTGATTCTCATATATTTCATAAACTCTCCGATTATGTGgatgaaaattataaaattctggAAATGTTAGATGGCATAGTGCCACAAATAGATATTAAGGCTACTACAAAGCTTTCCAGTTATGTGTGTCAACCGTGTGTGGATAAATTGTTGATCGGTTATAAATTCCAACAATTATGCATAGAAACCAACTGTCGTCTTCATGATTTGATGGGCATAGTTGTATTTGAGACCGCACCTAAATTAAAGGATGAAAAGTTATTGGATCCTTTGACGGGAGAGGCAAGACTTAAATTGAAGCAAGAGGTGGAAGATGAAGCATGTTTTGAATGTGAAATAGAACCCGTAGAATTTATTTCAATGGAATCCGTCAGCGATAATGATACGGATAATGATTCAGATTctagCAATGAAAAACTTCCAGTTTTTAAAGGAAACAAATCAAAAAACTACCCCACAACACCTACAGAATTGGAAAAACCTAACAAAAATAATCAACGTAAGCAAATAAAAAATAACGAAAGGACTGATCTAAAAGATGAAAATGACATTATTGAGGAAATACAATCATTTCAGTGTCCTGATTGCCctaaattgtttgaaaaaaagtCATCGCTATCGGCCCACTGCAAAGTACATATAAATAAAACTAATAAGGACCATAATAATGAAGAATTTATAGATGAAGTTGCAAAATCAAAAGTAATTGTAAAAATGGAAATAGAAGTATCACCACACATTTTTGAAGAACCAATGGATGATTTAAACGCAGATGCAGAATGGTGTAGTAATGACTATGAGGATTCAGatgataattctgaaaaaaatattttcacaaagCCTGGTACCGAACATACTAAAAATCTTGAATTTATTGATACCGGAATAGAAGAAATAGAAAAacctAATGATAGTGAAAAAATAAGCTATAGTTTGCCTTGCGAACTTTGTGGAAAAGTTTTTAAGAGTCAATATCATTTGAAACGTCATAGTTCTTCTGTACATGCCATTACTAAACCGCATGAATGTGAAATTTGTAAATATCgctttcctacaaaaaaatatttaacaaatcatttaaagcaacatgaAGACATTTTAGTATATCAATCACAGCCGGAGGGTTTTAAATGTCCCGATTgtccaaaactttttaaaaaaaagacaaatttgTCGGCTCATCGTCAAATACATGGTGCAGATGCTAATTATCCTTGCAAGGTGTGTCAACGAAACTTTTTGTCGGTTATGTCTTTAATTGAACACATAACCAATAAACATCCGGAAGTAGAAAAACACAAATGTGATCAGTGTGATAAAACGTTTGTCCTACATGCTCACCTGGTCGAACATTTAAATATACAGCATACTAAAAATCTTGAATTTATTGATACCGGAATAGTAGGAATAGAAAAaccTAATGATAGTGATAAAATAAGCTATAGTTTTCCTTGCGAACTTTGTGGAAAAGTTTTTAAGAGTCCATATCATTTGAAACGTCATAGTTCTTCTGTACATTCCATTACTCAACCGCATGAATGTGAAATTTGTAAATATCgctttcctacaaaaaaatatttaaaaaatcatttaaaacaaCATGAAGACATTTTAGTATATCCATCACAGCCGGAGGGCTTTAAATGTCCCGATTGTccaagactttttaaaaaaaaggcttATTTGTCGGCTCATCGTCAAATACATGCCCGCAATGGTGCAGACGCCAAATTTCCTTGCAAGGTATGTCAACGAAACTTTTTGTCGGTTATATCTTTAATTGAACACATAACCAATAAACATCCGGAAGTAGAAAAACACAAATGTGATCAGTGTGATAAAACGTTTGTTCTACATGCTCACCTGGTCGAACATTTAAATAGACATACAGGCAATACAAATGTGGTATGTTTAATATGTGAAAAAGAATTTGGCAATACGAATACTTTGAACGAACATATGCGCACACATATCGGGGAAAGTCCTCATTTGTGTCCTCAGTGTGGTAAAATATTTCGAACTGCTGGCAATTTACGTCAACATGTGGAACTGCATGCAGGTTTAAAGAAATATCAGTGTACTGAATGTCCAAGCCGTTTCAATTGTAGTTCAGGTTTATCAAAGCATATTAAAACTCATTCTAATGCTAAGCCATATGTATGTGATATGTGTGGTTCACGTTTTACGCGAGGTTTTTCATTGCGAAAACACATGTTGTCACATTCTGGAGAAAGACCGTTTAAATGTGATCAATGTAGTATGACATTTGTCATTAAGAACCTTTTAACGCGTCACATGCGTACCCATACGGGAGAGAAACCATATAAATGCAAGTACTGTGAACGTGCCTATGCCGCAAGTGGAGATTTGACCAAGCATTTGCGGACTCATGTAGGTGAAAACACCTATATGTGTGATCAGTGTCCTGTTGCTTTCAAATATCTAGCTGAGTTAAAACAACATCAAGCGGAACATTATAGAATGGCACAAAAACTCTTGCAACAAGCACAAAAGATGCCCCAAAATGCACAACAACACGAAATAGCTGAACAAACTCCATCATCAGCCTCAACAACAATTGCCGACAGTAGTTGA
- Protein Sequence
- MSEDLLKKCRTCLSDSHIFHKLSDYVDENYKILEMLDGIVPQIDIKATTKLSSYVCQPCVDKLLIGYKFQQLCIETNCRLHDLMGIVVFETAPKLKDEKLLDPLTGEARLKLKQEVEDEACFECEIEPVEFISMESVSDNDTDNDSDSSNEKLPVFKGNKSKNYPTTPTELEKPNKNNQRKQIKNNERTDLKDENDIIEEIQSFQCPDCPKLFEKKSSLSAHCKVHINKTNKDHNNEEFIDEVAKSKVIVKMEIEVSPHIFEEPMDDLNADAEWCSNDYEDSDDNSEKNIFTKPGTEHTKNLEFIDTGIEEIEKPNDSEKISYSLPCELCGKVFKSQYHLKRHSSSVHAITKPHECEICKYRFPTKKYLTNHLKQHEDILVYQSQPEGFKCPDCPKLFKKKTNLSAHRQIHGADANYPCKVCQRNFLSVMSLIEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNIQHTKNLEFIDTGIVGIEKPNDSDKISYSFPCELCGKVFKSPYHLKRHSSSVHSITQPHECEICKYRFPTKKYLKNHLKQHEDILVYPSQPEGFKCPDCPRLFKKKAYLSAHRQIHARNGADAKFPCKVCQRNFLSVISLIEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHTGNTNVVCLICEKEFGNTNTLNEHMRTHIGESPHLCPQCGKIFRTAGNLRQHVELHAGLKKYQCTECPSRFNCSSGLSKHIKTHSNAKPYVCDMCGSRFTRGFSLRKHMLSHSGERPFKCDQCSMTFVIKNLLTRHMRTHTGEKPYKCKYCERAYAASGDLTKHLRTHVGENTYMCDQCPVAFKYLAELKQHQAEHYRMAQKLLQQAQKMPQNAQQHEIAEQTPSSASTTIADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165738;
- 90% Identity
- iTF_01165738;
- 80% Identity
- -