Pinf041906.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pegoplata infirma
Gene Symbol
-
Assembly
GCA_963921195.1
Location
OY992540.1:214123376-214129247[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0011 0.09 14.6 2.1 1 23 180 202 180 202 0.91
2 18 2.1e-06 0.00018 23.1 0.9 2 23 302 324 301 324 0.94
3 18 0.00015 0.013 17.3 3.7 1 23 330 352 330 352 0.97
4 18 4.1e-06 0.00035 22.2 1.0 1 23 365 387 365 387 0.98
5 18 0.33 28 6.7 0.3 1 23 396 419 396 419 0.92
6 18 0.0011 0.094 14.5 3.6 1 23 425 448 425 448 0.97
7 18 1.6e-06 0.00014 23.4 1.4 1 23 475 498 475 498 0.93
8 18 0.00015 0.013 17.3 4.1 1 23 504 526 504 526 0.97
9 18 2.9e-05 0.0025 19.5 0.6 1 23 539 561 539 561 0.98
10 18 0.53 45 6.1 0.2 1 23 570 593 570 593 0.90
11 18 0.0011 0.092 14.6 4.9 1 23 599 621 599 621 0.98
12 18 0.00016 0.014 17.2 0.2 2 23 628 649 627 649 0.97
13 18 9.2e-06 0.00079 21.1 0.4 3 23 657 677 655 677 0.94
14 18 0.0036 0.31 12.9 2.8 1 23 683 705 683 705 0.99
15 18 5.3e-05 0.0046 18.7 1.0 1 23 711 733 711 733 0.98
16 18 1.6e-05 0.0014 20.3 1.8 1 23 739 761 739 761 0.99
17 18 8.3e-06 0.00071 21.2 0.5 1 23 767 789 767 789 0.99
18 18 0.00071 0.061 15.1 0.1 1 23 795 817 795 817 0.96

Sequence Information

Coding Sequence
ATGTCtgaagatttattaaaaaaatgccgcACTTGTTTAAGTGATTCTCATATATTTCATCAACTTTTCGATTATGTGgatgaaaattataaaattctggAAATGTTGGATAGAATAGTGCCACAAATAGATATTAAGGCTACTACAAAGCTTTCCAGTTATTTGTGTCAATCGTGTGTGGATAAATTGTTGATCGGTTATAAATTCCAACAATTATGCATAGAAACCAACAGTCGTCTTCATGATTTGATGGGCATAGTTGTATTTGAGACCGCACctaaaataattgatgaaaagtTACTGGATCCTTTGACGGGAGAggcaaattttaaattaaagcaaGAGGTAGAAGATGAAGCATGTTTTGAATGTGAAATAGAACCCGAAGAATTTATTTCAATGGAATCCGCCAGCGATAATGATACGGATAATGATTCAGATTCcagACCTAACAAAAATAATCAACGTAAGCAAATAAAAAATAACGAAAGGACTGATCTAAAAGATGAAAATGACATTATTGAGGAAATACAATCATTTCAGTGTCCTGATTGCCctaaattgtttgaaaaaaagtCATCGTTATCGGCCCACTGCAAAGAACATATAAATAAAACTAATAAGGACCCTAATAATGAAGAATTTATAGATGAAGTTGCAAAATCAAAAGTAATTGTAAAAATGGAAATAGAAGTATCACCACACATTTTTGAAGAACCAATGGATGATTTAAACGCAGATGCAGAATGGTGTAGTAATGACTATGAGGATTCAGatgataattctgaaaaaaatattttcacaaagCCTGGTACCGAACATACTAAAAATCTTGAATTTATTGATACCGGAATAGAAGAAATAGAAAAacCTAATGATAGTGAAAAAATAAGCTATAGTTTGCCTTGCGAACTTTGTGGAAAAGTTTTTAAGAGTCCGTATCATTTGAAACGTCATAGTTCTACTGTACATGCCATTACTAAACCGCATGAATGTGAAATTTGTAAATATCgctttcctacaaaaaaatatttaacaaatcatttaaagcaacatgaAGACATTTTAGTATATCAATCACAGCCGGAGGGTTTTAAATGTCCCGATTgtccaaaactttttaaaaaaaagactaATTTGTCGGCTCATCGTCAAATACATGCCCGCAATGGTGCAGACGCTAATTATCCTTGCAAGGTGTGTCAACGAAACTTTTTGTCGGTTATGTCTTTAATTGAGCACATAACCAATAAACATCCGGAAGTAGAAAAACACAAATGTGATCAGTGTGATAAAACGTTTGTCCTACATGCTCACCTGGTCGAACATTTAAATATACAGCATACTAAAAATCTTGAATTTATTGATACCGGAATAGTAGGAATAGAAAAaccTAATGATAGTGATAAAATAAGCTATAGTTTTCCTTGCGAACTTTGTGGAAAAGTTTTTAAGAGTCCATATCATTTGAAACGTCATAGTTCTTCTGTACATTCCATTACTCAACCGCATGAATGTGAAATTTGTAAATATCgctttcctacaaaaaaatatttaaaaaatcatttaaaacaaCATGAAGACATTTTAGTATATCCATCACAGCCGGAGGGCTTTAAATGTCCCGATTGTccaagactttttaaaaaaaaggcttATTTGTCGGCTCATCGTCAAATACATGCCCGCAATGGTGCAGACGCCAAATTTCCTTGCAAGGTATGTCAACGAAACTTTTTGTCGGTTATATCTTTAATTGAACACATAACCAATAAACATCCGGAAGTAGAAAAACACAAATGTGATCAGTGTGATAAAACGTTTGTTCTACATGCTCACCTGGTCGAACATTTAAATAGACATACAGGCAATACAAATGTGGTATGTTTAATATGTGAAAAAGAATTTGGCAATACGAATACTTTGAACGAACATATGCGCACACATATCGGGGAAAGTCCTCATTTGTGTCCTCAGTGTGGTAAAATATTTCGAACTGCTGGCAATTTACGTCAACATGTGGAACTGCATGCAGGTTTAAAGAAATATCAGTGTACTGAATGTCCAAGCCGTTTCAATTGTAGTTCAGGTTTATCAAAGCATATTAAAACTCATTCTAATGCTAAGCCATATGTATGTGATATGTGTGGTTCACGTTTTACGCGAGGTTTTTCATTGCGAAAACACATGTTGTCACATTCTGGAGAAAGACCGTTTAAATGTGATCAATGTAGTATGACatttgtcaTTAAGAACCTTTTAACGCGTCACATGCGTACCCATACGGGAGAGAAACCATATAAATGCAAGTACTGTGAACGTGCCTATGCCGCCAGTGGAGATTTGACCAAGCATTTGCGGACTCATGTAGGTGAAAACACCTATATGTGTGATCAGTGTCCTGTTGCTTTCAAATATCTAGCTGAGTTAAAACAACATCAAGCGGAACATTATAAAATGGCACAAAAACTCTTGCAACAAGCACAAAAGATGCCCCAAAATGCACAACAACACGAAATAGCTGAACAAACTCCATCATCAGCCTCAACAACAATTGCCGACAGTAGTTAA
Protein Sequence
MSEDLLKKCRTCLSDSHIFHQLFDYVDENYKILEMLDRIVPQIDIKATTKLSSYLCQSCVDKLLIGYKFQQLCIETNSRLHDLMGIVVFETAPKIIDEKLLDPLTGEANFKLKQEVEDEACFECEIEPEEFISMESASDNDTDNDSDSRPNKNNQRKQIKNNERTDLKDENDIIEEIQSFQCPDCPKLFEKKSSLSAHCKEHINKTNKDPNNEEFIDEVAKSKVIVKMEIEVSPHIFEEPMDDLNADAEWCSNDYEDSDDNSEKNIFTKPGTEHTKNLEFIDTGIEEIEKPNDSEKISYSLPCELCGKVFKSPYHLKRHSSTVHAITKPHECEICKYRFPTKKYLTNHLKQHEDILVYQSQPEGFKCPDCPKLFKKKTNLSAHRQIHARNGADANYPCKVCQRNFLSVMSLIEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNIQHTKNLEFIDTGIVGIEKPNDSDKISYSFPCELCGKVFKSPYHLKRHSSSVHSITQPHECEICKYRFPTKKYLKNHLKQHEDILVYPSQPEGFKCPDCPRLFKKKAYLSAHRQIHARNGADAKFPCKVCQRNFLSVISLIEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHTGNTNVVCLICEKEFGNTNTLNEHMRTHIGESPHLCPQCGKIFRTAGNLRQHVELHAGLKKYQCTECPSRFNCSSGLSKHIKTHSNAKPYVCDMCGSRFTRGFSLRKHMLSHSGERPFKCDQCSMTFVIKNLLTRHMRTHTGEKPYKCKYCERAYAASGDLTKHLRTHVGENTYMCDQCPVAFKYLAELKQHQAEHYKMAQKLLQQAQKMPQNAQQHEIAEQTPSSASTTIADSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01165739;
90% Identity
iTF_01165739;
80% Identity
-